Bioconductor HTseq

Showing : HTseq • reset

vote

replies

1.9k

views

HTSeq HTSeqCounts Could not find function DEXSeq

updated 8.1 years ago by Martin Morgan 25k • written 8.1 years ago by sakura.nussbaum ▴ 10

vote

replies

1.0k

views

DESeq2 microRNA HTSeq

17 months ago abhay.kanodia • 0

votes

replies

4.5k

views

voom htseq edgeR limma RNASeq123

updated 5.4 years ago by Gordon Smyth 50k • written 7.0 years ago by wd ▴ 30

votes

replies

590

views

DEXSeq HTSeq R

9 months ago • updated 8 months ago yr542 • 0

votes

replies

1.1k

views

software error HTSeq installation

updated 4.3 years ago by Martin Morgan 25k • written 4.3 years ago by eric33150 • 0

votes

replies

750

views

DESeq2 htseq DEGseq RNASeq read

updated 19 months ago by Michael Love 42k • written 19 months ago by CP • 0

votes

1.5k

views

DEXSeq dexseq_count htseq

7.3 years ago mat.lesche ▴ 90

votes

751

views

DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount

updated 18 months ago by Michael Love 42k • written 18 months ago by abhay.kanodia • 0

8 results • Page 1 of 1

Recent ...

Replies

Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)? by ATpoint ★ 4.2k

I don't have an answer to the "why" but maybe a simple reimplemention will do: ```r seqs <- c("ATCATCGTATCAAAGTC", "AAAACGTATCAAAGTC", "TG…

Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2 by Guido Hooiveld ★ 4.0k

After checking `?DESeqDataSetFromMatrix` note this information: arguments provided to SummarizedExperiment including rowRanges and met…

Answer: Error in gseDO function by Guido Hooiveld ★ 4.0k

Yes, you are missing something. :-) For a GSEA you will need to use as input all genes that you are analyzing; these genes should be ran…

Comment: GSVA function by Robert Castelo ★ 3.3k

No, negative values may occur after log transformation when the `log(x)` is taken from a positive number `x with 0 < x < 1`, and therefore …

Comment: conumee with Infinium MethylationEPIC v2.0 by sgomez • 0

Hi Max, Could you try this? https://support.bioconductor.org/p/9136138/#9136840

Votes

A: Comparison between two different group's pathway analysis results

DiffBind Batch Effect

A: DiffBind Batch Effect

C: DiffBind Batch Effect

Awards • All

Popular Question to Robert Castelo ★ 3.3k