Bioconductor HTseq

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4.5k

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voom htseq edgeR limma RNASeq123

updated 5.4 years ago by Gordon Smyth 50k • written 7.0 years ago by wd ▴ 30

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1.9k

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 8.1 years ago by Martin Morgan 25k • written 8.1 years ago by sakura.nussbaum ▴ 10

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1.5k

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DEXSeq dexseq_count htseq

7.3 years ago mat.lesche ▴ 90

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1.1k

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software error HTSeq installation

updated 4.3 years ago by Martin Morgan 25k • written 4.3 years ago by eric33150 • 0

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DESeq2 microRNA HTSeq

17 months ago abhay.kanodia • 0

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752

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DESeq2 htseq DEGseq RNASeq read

updated 19 months ago by Michael Love 42k • written 19 months ago by CP • 0

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751

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DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount

updated 18 months ago by Michael Love 42k • written 18 months ago by abhay.kanodia • 0

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591

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DEXSeq HTSeq R

9 months ago • updated 8 months ago yr542 • 0

8 results • Page 1 of 1

Recent ...

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Comment: Error in gseDO function by Javier • 0

Thank you for your answer! The thing is I'm working with 12 genes (I did also some targeted cholesterol efflux-related genes, but for sha…

Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)? by Ali Osman • 0

Thanks for your response and suggestions @atpoint ! I think implementation of the function is not a problem (I already have some options an…

Comment: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU by Marek Gierlinski ▴ 30

Two years on and the issue is still there. Thank you Arthur for the solution!

Comment: Cannot install oligo on Fedora by mbassal • 0

so whats the solution for this error?

Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)? by ATpoint ★ 4.2k

I don't have an answer to the "why" but maybe a simple reimplemention will do: ```r seqs <- c("ATCATCGTATCAAAGTC", "AAAACGTATCAAAGTC", "TG…

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Answer: Error in gseDO function

Comment: what the test method for enrichGO in clusterProfiler?

A: Comparison between two different group's pathway analysis results

DiffBind Batch Effect

A: DiffBind Batch Effect

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Popular Question to Robert Castelo ★ 3.3k