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HapMap
•
reset
0
votes
8
replies
1.8k
views
mouse SNPs
SNP
Annotation
GO
HapMap
annotate
SNP
Annotation
GO
HapMap
annotate
13.7 years ago
Glazko, Galina
▴ 350
0
votes
2
replies
1.2k
views
error from rsamtools on 1000 genomes
Cancer
HapMap
Rsamtools
genomes
Cancer
HapMap
Rsamtools
genomes
updated 13.8 years ago by
Martin Morgan
25k • written 13.8 years ago by
Sergii Ivakhno
▴ 100
0
votes
3
replies
1.3k
views
Problem with justSNPRMA, library "oligo"
SNP
HapMap
SNP
HapMap
15.2 years ago
alessio boattini
▴ 30
0
votes
3
replies
1.2k
views
smlSet
SNP
HapMap
GGtools
SNP
HapMap
GGtools
updated 14.1 years ago by
Vincent J. Carey, Jr.
6.7k • written 14.1 years ago by
claire pujoll
▴ 30
0
votes
2
replies
1.2k
views
Problems with oligo and pd.genomewidesnp.6
SNP
Annotation
HapMap
SNP
Annotation
HapMap
updated 16.0 years ago by
Vincent J. Carey, Jr.
6.7k • written 16.0 years ago by
Jeremy Silver
▴ 10
0
votes
1
reply
1.6k
views
DiffBind & Chip-exo
HapMap
HapMap
10.8 years ago
Rory Stark
★ 5.2k
0
votes
1
reply
1.6k
views
biomaRt and HapMap
SNP
HapMap
biomaRt
SNP
HapMap
biomaRt
updated 12.8 years ago by
Steffen Durinck
▴ 540 • written 12.8 years ago by
Deidre
▴ 10
0
votes
2
replies
2.2k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Transcription
HapMap
PolyPhen
SIFT
convert
genomes
ensemblVEP
Transcription
HapMap
SIFT
updated 10.3 years ago by
Valerie Obenchain
★ 6.8k • written 10.3 years ago by
Thomas Sandmann
▴ 30
2
votes
3
replies
5.1k
views
Linkage disequilibrium with 1000 Genomes/HapMap
HapMap
genomes
HapMap
genomes
9.8 years ago
enricoferrero
▴ 660
0
votes
3
replies
1.2k
views
HapMap gene list
GO
HapMap
GO
HapMap
updated 13.8 years ago by
Kasper Daniel Hansen
★ 6.5k • written 13.8 years ago by
noxyport@gmail.com
▴ 20
0
votes
1
reply
1.4k
views
Help for snpMatrix
HapMap
HapMap
updated 12.2 years ago by
Vincent J. Carey, Jr.
6.7k • written 12.2 years ago by
MLSC MANIPAL
▴ 120
0
votes
1
reply
1.0k
views
connect to HapMart with biomaRt
HapMap
biomaRt
HapMap
biomaRt
updated 16.0 years ago by
Steffen
▴ 500 • written 16.0 years ago by
Richard Pearson
▴ 390
0
votes
2
replies
1.2k
views
Strange output in GenABEL convert.snp.ped()
SNP
HapMap
SNP
HapMap
updated 14.2 years ago by
Martin Morgan
25k • written 14.2 years ago by
Paul Geeleher
★ 1.3k
0
votes
0
replies
662
views
Do you know a sofware to draw pedigrees + haplotypes?
SequencingData
STR
MutationalPatterns
pedigree
HapMap
2.8 years ago
Negar
• 0
0
votes
0
replies
1.5k
views
SNPs in High Linkage Disequilibrium
SNP
HapMap
SNP
HapMap
14.9 years ago
palermogp@libero.it
▴ 10
0
votes
0
replies
726
views
Hapmap miRNA expression data
miRNA
HapMap
ArrayExpress
miRNA
HapMap
ArrayExpress
14.4 years ago
Paul Geeleher
★ 1.3k
0
votes
0
replies
1.2k
views
Illumina CanineHD CNV & crlmm?
GO
HapMap
cdf
affy
crlmm
GO
HapMap
cdf
affy
crlmm
13.4 years ago
Matthew Ritchie
▴ 1000
0
votes
0
replies
2.7k
views
Limma - RNA-Seq DE genes - Quantile normalized log transformed RPKM data
HapMap
limma
HapMap
limma
12.4 years ago
Gordon Smyth
50k
0
votes
0
replies
907
views
Help to access hapmap using biomart
HapMap
biomaRt
HapMap
biomaRt
12.2 years ago
MLSC MANIPAL
▴ 120
0
votes
0
replies
877
views
How to make Illumina cluster files from HapMap
HapMap
HapMap
11.9 years ago
JiangZhengyu
▴ 40
0
votes
0
replies
1.4k
views
the set of SNPs difference between Genome build 37.1 and 37.3
SNP
HapMap
SNP
HapMap
11.7 years ago
shirley zhang
★ 1.0k
0
votes
0
replies
1.0k
views
Problem in reading SNP hapmap data
SNP
HapMap
SNP
HapMap
10.6 years ago
Xiaolian Yuan
▴ 30
0
votes
0
replies
844
views
Access HapMap from biomart
hapmap
8.3 years ago
jaganmutyala
• 0
0
votes
0
replies
973
views
connect to HapMart with biomaRt
HapMap
biomaRt
HapMap
biomaRt
17.2 years ago
Steffen Durinck
▴ 580
24 results • Page
1 of 1
Recent ...
Replies
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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siajunren
• 0
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Rory Stark
★ 5.2k
Popular Question
to
tangming2005
▴ 190
Popular Question
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Ian D.
▴ 70
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junhui.li11
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