Bioconductor HiCUP

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HOMER HiCUP BAM HiC

4.1 years ago Ankit ▴ 20

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diffhic gothic hicup hic-c hic

updated 7.1 years ago by Aaron Lun ★ 29k • written 7.1 years ago by mictadlo ▴ 10

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hic diffhic gothic hicup hic-c

7.1 years ago mictadlo ▴ 10

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hicup hi-c diffhic homer

8.5 years ago e.jacobson ▴ 10

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Answer: How to do differential expresion across time serise with edgeR? by Gordon Smyth 53k

You actually haven't done any DE analysis at all, you've just selected for genes with zero or large D0 counts. Another issue is that you a…

Answer: ATACseq rudimentary questions by Kevin Blighe ★ 4.0k

For differential analysis tools like DiffTF and TOBIAS, the standard and statistically sound approach is to create **one large consensus pe…

Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment? by Gordon Smyth 53k

The warning message is telling you that you already have the packages installed. However, you might consider upgrading to the current vers…

Comment: Empty boxes in treemap plot rrvgo package by TikTsokaasocissalpc • 0

Clear visualization matters just as much in mobile entertainment as in data analysis. The [Try KK33 Game App now][1] focuses on clean layou…

Comment: nice 3D displays for PCA analysis by adam80haynes • 0

That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…

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Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment?

A: limma-voom duplicateCorrelation once or twice, difference?

A: limma: comparison of repeat measurements - blocking or within-subject correlatio

Answer: DecideTest vs topTAGs in edgeR

A: LIMMA time series spline model.matrix design setup

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