Showing : IlluminaHumanMethylation450kanno.ilmn12.hg19 • reset
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minfi, lumi, methylumi, DMRcate installation error
minfi lumi methylumi dmrcate illuminahumanmethylation450kanno.ilmn12.hg19
updated 8.8 years ago by ▴ 230 • written 8.8 years ago by ▴ 10
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2
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3.7k
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Illumina 450k Manifest: Probes Mapping to Multiple RefGene Groups and Names
illuminahumanmethylation450kanno.ilmn12.hg19 minfi illuminahumanmethylation450k.db methylation
updated 3.7 years ago by • 0 • written 10.3 years ago by ▴ 10
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1
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1.6k
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Installation problem in IlluminaHumanMethylation450kanno.ilmn12.hg19
IlluminaHumanMethylation450kanno.ilmn12.hg19 R
updated 6.4 years ago by 68k • written 6.4 years ago by • 0
1
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3
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2.6k
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minfi - estimatecellcount function
minfi illuminahumanmethylation450kanno.ilmn12.hg19 illuminahumanmethylation450k.db
updated 10.4 years ago by ★ 6.5k • written 10.4 years ago by ▴ 60
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1.8k
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Unable to load any IlluminaHumanMethylation450k annotation
FDb.InfiniumMethylation.hg19 IlluminaHumanMethylation450kanno.ilmn12.hg19
9.5 years ago CPR ▴ 30
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Using IlluminaHumanMethylation450kanno.ilmn12.hg19 and froze at installation.
IlluminaHumanMethylation450kanno.ilmn12.hg19
5.0 years ago whirlsyu • 0
0
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1
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2.7k
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Analyzing 450k Methylation from TCGA Website
minfidata minfi illuminahumanmethylation450k.db illuminahumanmethylation450kanno.ilmn12.hg19
10.8 years ago alejandretheodore • 0
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1
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1.5k
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reference manual "IlluminaHumanMethylation450kanno.ilmn12.hg19"
IlluminaHumanMethylation450kanno.ilmn12.hg19
10.9 years ago richa.gupta • 0
8 results • Page 1 of 1
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Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
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