Bioconductor Minfidata

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441

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RnBeads minfiData minfi EPICarray

updated 4 months ago by Basti ▴ 720 • written 4 months ago by Jitendra ▴ 10

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479

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

updated 6 months ago by James W. MacDonald 63k • written 6 months ago by Grace • 0

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504

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

written 7 months ago by Grace • 0

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656

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minfiData ChAMP

21 months ago behr201 • 0

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528

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minfi minfiData MethylationArrayData

2.1 years ago ponche_de_kiwi • 0

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1.5k

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minfiData plotsex minfi minfiDataEPIC r

updated 2.6 years ago by suman • 0 • written 2.6 years ago by Bethan • 0

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1.8k

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minfi methylation dataimport minfidata missmethyl

updated 5.0 years ago by James W. MacDonald 63k • written 5.0 years ago by moldach ▴ 20

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1.3k

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minfi minfidata rgl. mac os x el capitan

updated 7.4 years ago by Kasper Daniel Hansen 6.5k • written 7.4 years ago by holbrookjoanna • 0

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2.1k

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minfidata minfi illuminahumanmethylation450k.db illuminahumanmethylation450kanno.ilmn12.hg19

8.5 years ago alejandretheodore • 0

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1.7k

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minfi minfidata illumina methylation dmpfinder

updated 9.0 years ago by James W. MacDonald 63k • written 9.0 years ago by michael.zulyniak • 0

10 results • Page 1 of 1

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Comment: Exporting DESeq2 filtered results by James W. MacDonald 63k

I am interested to know what part of my response you found rude. I asked nicely that you don't add to ancient posts, said your post isn't r…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

> I can imagine writing a sparse high-dimensional array in HDF5, but I'm still not sure how to implement the part where it is read and imme…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

Not in BioC 3.18. At some point (e.g. in 6 months) they will be deprecated, then 6 months later (i.e. in 1 year) they will be defunct, then…

Comment: Biostrings error at retrieving protein sequences by Hervé Pagès 16k

Yes, but you need to put the clean names back on the AAStringSet object: ``` names(protein_sequences) <- gsub(" .*", "", names(protein_sequ…

Comment: Exporting DESeq2 filtered results by camillab. ▴ 10

thanks! I didn't`t notice that. I will cancel it now!

Votes

Batch Effect in DESeq2, how to control, how to remove it, how to address biological question

A: BiomaRt Arabidopsis genome unavailable

Answer: enrichKEGG

A: Effect of lfcThreshold on p-value in DESeq2

Comment: Mixed up sample info with plotPCA

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