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minfidata
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1
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894
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normalizatino of dna methylation EPIC data
DNA
minfiData
minfiDataEPIC
DNAMethylation
minfi
12 months ago
user_bioinfo
• 0
0
votes
1
reply
849
views
minfi - bumphunter value problem
bumphunter
minfiData
minfi
bumphun
updated 19 months ago by
James W. MacDonald
68k • written 20 months ago by
kumakeren16
• 0
1
vote
4
replies
1.0k
views
minfi::read.metharray.exp
minfiData
minfi
updated 22 months ago by
Basti
▴ 780 • written 22 months ago by
clacarion
• 0
0
votes
1
reply
724
views
Matrix multiplication error to estimate telomere length
methylclockData
minfi
methylclock
minfidata
updated 2.0 years ago by
James W. MacDonald
68k • written 2.0 years ago by
sharangiiv
• 0
0
votes
3
replies
1.9k
views
Batch correction using control probes in EPIC array data
RnBeads
minfiData
minfi
EPICarray
updated 2.8 years ago by
Basti
▴ 780 • written 2.8 years ago by
Jitendra
▴ 10
0
votes
4
replies
2.1k
views
Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis
minfiData
minfi
MethylationArrayData
MethylationArray
updated 3.0 years ago by
James W. MacDonald
68k • written 3.0 years ago by
Grace
• 0
0
votes
5
replies
2.4k
views
minfi error read.metharray.exp
methylationArrayAnalysis
minfiData
minfi
MethylationArrayData
MethylationArray
written 3.0 years ago by
Grace
• 0
0
votes
0
replies
1.4k
views
Error in champ.svd - function 'EstDimRMTv2' within champ.svd acting inconsistently?
minfiData
ChAMP
4.2 years ago
behr201
• 0
0
votes
0
replies
1.4k
views
minfi - estimateCellCounts2-proportions sum more than 1
minfi
minfiData
MethylationArrayData
4.6 years ago
ponche_de_kiwi
• 0
1
vote
1
reply
3.0k
views
plotSex error message
minfiData
plotsex
minfi
minfiDataEPIC
r
updated 5.0 years ago by
suman
• 0 • written 5.0 years ago by
Bethan
• 0
1
vote
2
replies
2.5k
views
Minfi read.metharray.sheet error
minfi
methylation
dataimport
minfidata
missmethyl
updated 7.5 years ago by
James W. MacDonald
68k • written 7.5 years ago by
moldach
▴ 20
0
votes
1
reply
1.9k
views
Problem loading minfi on macOS
minfi
minfidata
rgl.
mac os x
el capitan
updated 9.8 years ago by
Kasper Daniel Hansen
★ 6.5k • written 9.8 years ago by
holbrookjoanna
• 0
0
votes
1
reply
2.8k
views
Analyzing 450k Methylation from TCGA Website
minfidata
minfi
illuminahumanmethylation450k.db
illuminahumanmethylation450kanno.ilmn12.hg19
10.9 years ago
alejandretheodore
• 0
0
votes
2
replies
2.4k
views
Help resovling"Error in lm.fit" with 'dmpFinder' function in minfi
minfi
minfidata
illumina
methylation
dmpfinder
updated 11.5 years ago by
James W. MacDonald
68k • written 11.5 years ago by
michael.zulyniak
• 0
14 results • Page
1 of 1
Recent ...
Replies
Comment: Unable to find ENTREZ IDs
by
Adithi
• 0
Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…
Comment: Unable to find ENTREZ IDs
by
Adithi
• 0
Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…
Answer: Unable to find ENTREZ IDs
by
James W. MacDonald
68k
Those are the 'symbols', and are a concatenation of LOC and the NCBI Gene ID (what used to be called an Entrez Gene ID). As an example:http…
Answer: Inconsistencies between accessor functions for TxDb databases with selected seql
by
a2a2hd42aa
• 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
by
A.Barden
▴ 20
Thanks both for this useful information.
Votes
Answer: OrgDb for maize
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
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