Showing : Iranges • reset
0
votes
11
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3.1k
views
NucleR: processReads/solveUserSEW0 - Error
IRanges ShortRead nucleR IRanges ShortRead nucleR
13.9 years ago Stefanie Ververs ▴ 70
0
votes
4
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1.6k
views
IRanges: Request for a "step" argument in runsum
Coverage Annotation Cancer PROcess IRanges genomes Coverage Annotation Cancer PROcess
updated 14.3 years ago by 16k • written 14.3 years ago by ▴ 100
0
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1
reply
953
views
IRanges: Request for a "step" argument in runsum
Cancer PROcess IRanges genomes Cancer PROcess IRanges genomes
updated 14.3 years ago by ★ 11k • written 14.3 years ago by 16k
0
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2
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1.3k
views
IRanges package: findOverlaps on blobs
Cancer convert IRanges Cancer convert IRanges
14.3 years ago Hervé Pagès 16k
0
votes
0
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909
views
ChIPpeakAnno
annotate IRanges ChIPpeakAnno annotate IRanges ChIPpeakAnno
14.3 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
824
views
IRanges question!
annotate IRanges ChIPpeakAnno annotate IRanges ChIPpeakAnno
updated 14.3 years ago by ★ 11k • written 14.3 years ago by ▴ 290
0
votes
1
reply
899
views
range data aggregate error
IRanges IRanges
updated 14.3 years ago by ★ 11k • written 14.3 years ago by ▴ 10
0
votes
2
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1.2k
views
IRanges package: findOverlaps on blobs
convert IRanges convert IRanges
updated 14.4 years ago by ★ 13k • written 14.4 years ago by ▴ 250
0
votes
4
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1.4k
views
IRanges: Request for a "step" argument in runsum
Cancer IRanges genomes Cancer IRanges genomes
updated 14.4 years ago by ★ 11k • written 14.4 years ago by ▴ 100
0
votes
1
reply
1.4k
views
An error while installing RWebService
limma biomaRt RWebServices IRanges microRNA SJava ChIPpeakAnno limma biomaRt RWebServices
updated 14.6 years ago by ★ 8.2k • written 14.6 years ago by ▴ 120
0
votes
1
reply
958
views
IRanges - Find
IRanges IRanges
updated 14.6 years ago by 25k • written 14.6 years ago by ▴ 250
0
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1
reply
1.3k
views
identify non-overlapping regions
IRanges IRanges
updated 14.7 years ago by ★ 13k • written 14.7 years ago by ▴ 10
0
votes
2
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1.8k
views
RE : RE : maping SNPs
SNP SNPlocs TranscriptDb IRanges GenomicFeatures SNP SNPlocs TranscriptDb IRanges
updated 14.8 years ago by ★ 6.8k • written 14.8 years ago by ▴ 450
0
votes
0
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870
views
Regarding to ChIPpeakAnno package
IRanges ChIPpeakAnno IRanges ChIPpeakAnno
14.8 years ago Julie Zhu ★ 4.3k
0
votes
0
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595
views
IRanges
Cancer IRanges Cancer IRanges
14.9 years ago Hervé Pagès 16k
0
votes
2
replies
1.8k
views
one problem about IRanges Package
simpleaffy IRanges simpleaffy IRanges
updated 14.9 years ago by 6.7k • written 14.9 years ago by ▴ 50
0
votes
0
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969
views
findOverlaps for GRanges
IRanges GenomicRanges IRanges GenomicRanges
14.9 years ago Kasper Daniel Hansen ★ 6.5k
0
votes
2
replies
928
views
rtracklayer 'track' method, a viewLimits parameter?
rtracklayer IRanges rtracklayer IRanges
updated 14.9 years ago by ★ 11k • written 14.9 years ago by ★ 1.1k
0
votes
1
reply
969
views
duplicated on IRanges object
IRanges IRanges
updated 15.0 years ago by 16k • written 15.0 years ago by ▴ 10
0
votes
3
replies
858
views
A story about IRanges::GappedRanges ... how does it end?
Cancer IRanges Cancer IRanges
updated 15.0 years ago by ★ 11k • written 15.0 years ago by ★ 13k
0
votes
3
replies
1.1k
views
Combining two CompressedNormalIRangesList objects doesn't work
Cancer IRanges Cancer IRanges
15.0 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
1.2k
views
Error while ChIPpeakAnno installation
limma biomaRt IRanges ChIPpeakAnno limma biomaRt IRanges ChIPpeakAnno
updated 15.0 years ago by ★ 4.3k • written 15.0 years ago by ▴ 260
0
votes
4
replies
2.1k
views
help with flank()
IRanges IRanges
updated 15.0 years ago by 6.7k • written 15.0 years ago by ▴ 330
0
votes
0
replies
1.3k
views
Flagging overlapping gene exons (was Re: Question about CSAMA10 ...)
Annotation Cancer IRanges GenomicFeatures GenomicRanges Annotation Cancer IRanges
15.0 years ago Steve Lianoglou ★ 13k
0
votes
2
replies
2.6k
views
Coverage vs GC bias - how to?
Coverage BSgenome BSgenome IRanges Coverage BSgenome BSgenome IRanges
updated 15.1 years ago by ▴ 590 • written 15.1 years ago by ▴ 100
0
votes
5
replies
1.6k
views
Subscripting GenomicRanges objects with [[ or $
IRanges IRanges
updated 15.1 years ago by ★ 11k • written 15.1 years ago by ▴ 250
0
votes
6
replies
1.6k
views
Subscripting GenomicRanges objects with [[ or $
IRanges IRanges
updated 15.1 years ago by ▴ 160 • written 15.1 years ago by ▴ 250
0
votes
5
replies
1.7k
views
A code kata: evening-out *Ranges ends.
Infrastructure Cancer IRanges Infrastructure Cancer IRanges
15.1 years ago Steve Lianoglou ★ 13k
0
votes
7
replies
1.6k
views
IRanges: interaction with model fitting
Regression IRanges Regression IRanges
updated 15.1 years ago by 25k • written 15.1 years ago by ★ 6.5k
0
votes
1
reply
1.1k
views
IRanges glitch: error restoring saved RangedData object
IRanges IRanges
updated 15.2 years ago by 25k • written 15.2 years ago by ▴ 550
0
votes
1
reply
1.1k
views
TranscriptDb and genomicranges questions
Cancer TranscriptDb Category IRanges GenomicRanges Cancer TranscriptDb Category IRanges
15.2 years ago Hervé Pagès 16k
0
votes
0
replies
1.2k
views
TranscriptDb and genomicranges questions
TranscriptDb IRanges GenomicRanges TranscriptDb IRanges GenomicRanges
15.2 years ago Patrick Aboyoun ★ 1.6k
0
votes
4
replies
1.4k
views
Performing set ops with an IRanges object loaded with elementMetadata is like a shotgun, pointing at my foot.
Cancer IRanges Cancer IRanges
updated 15.3 years ago by ★ 11k • written 15.3 years ago by ★ 13k
0
votes
4
replies
1.7k
views
error in function reduce from girafe
Annotation annotate biomaRt IRanges girafe Annotation annotate biomaRt IRanges girafe
updated 15.3 years ago by ▴ 450 • written 15.3 years ago by ▴ 810
0
votes
0
replies
751
views
Biostrings_2.16.5 / IRanges_1.7.1 :: Broken(?) -- DISREGARD
Cancer Biostrings IRanges Cancer Biostrings IRanges
15.3 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
1.0k
views
Tips for the findOverlappingPeaks function in ChIPpeakAnno package
IRanges IRanges
15.3 years ago Noah Dowell ▴ 410
0
votes
6
replies
1.7k
views
distances for IRanges
IRanges IRanges
updated 15.3 years ago by ★ 11k • written 15.3 years ago by ★ 6.5k
0
votes
2
replies
1.1k
views
annotating reads acording with position on mapping
Annotation annotate biomaRt IRanges Annotation annotate biomaRt IRanges
updated 15.4 years ago by ▴ 450 • written 15.4 years ago by ▴ 810
0
votes
2
replies
1.2k
views
IRanges bug? Running do.cal("c", list.of.IRanges.objects)
Cancer IRanges Cancer IRanges
updated 15.4 years ago by ★ 1.6k • written 15.4 years ago by ★ 13k
0
votes
3
replies
1.4k
views
seqselect function in IRanges not working
IRanges IRanges
updated 15.4 years ago by 68k • written 15.4 years ago by ▴ 250
0
votes
0
replies
1.9k
views
function symbol not found (was Re: seqselect function in IRanges not working)
IRanges IRanges
15.4 years ago Patrick Aboyoun ★ 1.6k
0
votes
6
replies
2.0k
views
query and subject hits in findOverlaps through different space names
IRanges IRanges
updated 15.5 years ago by ★ 11k • written 15.5 years ago by ★ 3.4k
0
votes
2
replies
914
views
Recycling vars with IRanges::reflect
Cancer IRanges Cancer IRanges
updated 15.5 years ago by ★ 1.6k • written 15.5 years ago by ★ 13k
0
votes
2
replies
1.9k
views
IRanges: as.matrix.RangesMatching not found with NAMESPACE
IRanges IRanges
updated 15.6 years ago by ★ 1.6k • written 15.6 years ago by ▴ 550
0
votes
0
replies
1.1k
views
request: calculate coverage with weight on RangedData object
Coverage Cancer IRanges Coverage Cancer IRanges
15.6 years ago Janet Young ▴ 740
0
votes
0
replies
729
views
question about forgeBSgenomeDataPkg function
Cancer BSgenome BSgenome IRanges Cancer BSgenome BSgenome IRanges
15.6 years ago Hervé Pagès 16k
0
votes
3
replies
2.9k
views
trouble using help() after loading IRanges and [tcl] grab failed and possible tcltk problem
GO IRanges GO IRanges
updated 15.6 years ago by 16k • written 15.6 years ago by ▴ 350
0
votes
1
reply
1.3k
views
concurrent R-release & R-devel versions -- bioc also? [was Re: from TF DNA binding motif to downstream genes?]
Transcription GO celegans BSgenome Biostrings BSgenome IRanges Transcription GO celegans
updated 15.7 years ago by 21k • written 15.7 years ago by ★ 1.1k
0
votes
0
replies
1.3k
views
stranded findOverlaps
Sequencing Annotation GO rtracklayer IRanges genomeIntervals Sequencing Annotation GO
15.7 years ago Robert Castelo ★ 3.4k
0
votes
1
reply
715
views
bug in IRanges::disjoin and strange behavior of c
IRanges IRanges
updated 15.7 years ago by 16k • written 15.7 years ago by ★ 6.5k
275 results • Page 5 of 6
Recent ...
Replies
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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