Showing : Iranges • reset
0
votes
0
replies
2.0k
views
working with genome-wide phastCons scores
BSgenome convert BSgenome rtracklayer IRanges charm BSgenome convert BSgenome rtracklayer
12.3 years ago Robert Castelo ★ 3.4k
0
votes
2
replies
7.4k
views
how to obtain base counts from BAM file at specific genomic coordinates
SNP Sequencing Coverage Alignment Cancer Biostrings PROcess IRanges GenomicRanges SNP
updated 12.3 years ago by ★ 11k • written 12.3 years ago by 16k
0
votes
4
replies
2.5k
views
Getting first or last hit from a Hits object
IRanges GenomicRanges IRanges GenomicRanges
updated 12.3 years ago by ★ 11k • written 12.3 years ago by ▴ 760
0
votes
2
replies
1.5k
views
Fwd: BioStrings PairwiseAlignment deletion() insertion() function
Alignment Cancer Biostrings IRanges Alignment Cancer Biostrings IRanges
updated 12.3 years ago by ▴ 30 • written 12.3 years ago by 16k
0
votes
2
replies
1.5k
views
'version' is missing error when running makeTxDbPackageFromUCSC
TranscriptDb IRanges TranscriptDb IRanges
updated 12.4 years ago by ★ 8.2k • written 12.4 years ago by ▴ 40
0
votes
0
replies
877
views
Course: Understanding R / Bioconductor, Sept 30-Oct 1, Seattle
Cancer Biostrings biomaRt IRanges GenomicRanges Cancer Biostrings biomaRt IRanges
12.4 years ago Martin Morgan 25k
0
votes
3
replies
3.4k
views
MEDIPS, GRanges, IRanges error processing BAM file
Alignment BSgenome PROcess BSgenome IRanges MEDIPS Alignment BSgenome PROcess BSgenome
updated 12.4 years ago by ▴ 570 • written 12.4 years ago by ▴ 40
0
votes
2
replies
1.4k
views
*Ranges paper published
Infrastructure IRanges GenomicFeatures GenomicRanges Infrastructure IRanges GenomicFeatures
updated 12.5 years ago by ★ 4.2k • written 12.5 years ago by ★ 11k
0
votes
4
replies
1.8k
views
IRanges::unlist in package
rtracklayer IRanges GenomicFeatures Rsamtools rtracklayer IRanges GenomicFeatures Rsamtools
updated 12.5 years ago by 68k • written 12.5 years ago by ▴ 220
0
votes
16
replies
2.5k
views
IRanges is broken in Cygwin (mingw/math.h)
IRanges IRanges
updated 12.5 years ago by ★ 11k • written 12.5 years ago by ▴ 680
0
votes
2
replies
1.4k
views
transport mcols from one GRange obejct to another
IRanges IRanges
updated 12.8 years ago by 25k • written 12.8 years ago by ▴ 100
0
votes
1
reply
3.0k
views
biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails
BSgenome hexbin BSgenome IRanges genomeIntervals GenomicRanges girafe Rsamtools HiTC HiTC
updated 12.9 years ago by ★ 8.2k • written 12.9 years ago by ▴ 100
0
votes
3
replies
1.3k
views
startup options
IRanges IRanges
updated 12.9 years ago by ★ 4.3k • written 12.9 years ago by ★ 6.5k
0
votes
0
replies
847
views
Expected value of finding a sequence
Biostrings IRanges Biostrings IRanges
12.9 years ago Tim Smith ★ 1.1k
1
vote
0
replies
2.2k
views
pileup coverage from BAM file
Coverage Cancer IRanges GenomicRanges Coverage Cancer IRanges GenomicRanges
12.9 years ago Martin Morgan 25k
0
votes
0
replies
1.1k
views
question about how to get ranges in Biostrings
Cancer IRanges Gviz Cancer IRanges Gviz
12.9 years ago Hervé Pagès 16k
0
votes
2
replies
4.1k
views
Generate a GRangesList from a classical list of GRangesObjects
IRanges IRanges
updated 12.9 years ago by ★ 4.2k • written 12.9 years ago by ▴ 170
0
votes
0
replies
1.0k
views
Confusion over inconsistencies with showMethods('Rle') when loaded via GenomicRanges
GO IRanges GO IRanges
13.0 years ago Stephanie M. Gogarten ▴ 890
0
votes
4
replies
2.2k
views
Using GenomicRanges with table data
IRanges GenomicRanges IRanges GenomicRanges
updated 13.0 years ago by ★ 13k • written 13.0 years ago by ▴ 60
0
votes
1
reply
1.7k
views
easyRNAseq remove overlapping features
Annotation BSgenome BSgenome IRanges easyRNASeq Annotation BSgenome BSgenome IRanges
updated 13.0 years ago by ★ 1.2k • written 13.0 years ago by ▴ 160
0
votes
28
replies
4.0k
views
countMatches() (was: table for GenomicRanges)
Cancer IRanges Cancer IRanges
updated 13.1 years ago by ★ 11k • written 13.1 years ago by 16k
0
votes
1
reply
1.4k
views
IRanges install error with parallel/mcmapply
Coverage IRanges Coverage IRanges
updated 13.2 years ago by ★ 8.2k • written 13.2 years ago by ▴ 10
0
votes
8
replies
2.7k
views
IRanges/List oddity: do.call of `c` on a list of IRangesList returns "list" only when the list is named
Cancer IRanges BiocGenerics Cancer IRanges BiocGenerics
updated 13.2 years ago by ★ 11k • written 13.2 years ago by 16k
0
votes
0
replies
845
views
[Bioc-devel] knowing what is changed/new in release patches
IRanges IRanges
13.2 years ago Malcolm Cook ★ 1.6k
0
votes
0
replies
1.7k
views
Rle factors, table and empty levels
IRanges IRanges
13.2 years ago Valerie Obenchain ★ 6.8k
0
votes
4
replies
1.1k
views
knowing what is changed/new in release patches
IRanges IRanges
updated 13.2 years ago by ★ 6.5k • written 13.2 years ago by ★ 1.6k
0
votes
1
reply
2.4k
views
compilation failed for package \'IRanges\' @str_utils.c(152) identifier \"timezone\" is undefined
Coverage IRanges Coverage IRanges
updated 13.2 years ago by ★ 8.2k • written 13.2 years ago by ★ 13k
0
votes
1
reply
737
views
Rle factors, table and empty levels
IRanges IRanges
updated 13.2 years ago by ★ 6.8k • written 13.2 years ago by ▴ 20
0
votes
1
reply
3.1k
views
Integer overflow when summing an 'integer' Rle
Coverage GO Cancer convert IRanges Coverage GO Cancer convert IRanges
updated 13.4 years ago by ★ 1.2k • written 13.4 years ago by ★ 6.8k
0
votes
0
replies
1.7k
views
GenomicRanges: nearest() for GRanges not returning overlaps
IRanges GenomicRanges IRanges GenomicRanges
13.4 years ago Valerie Obenchain ★ 6.8k
0
votes
1
reply
1.2k
views
nearest for GRanges ignoring overlapping ranges
Cancer IRanges GenomicRanges Cancer IRanges GenomicRanges
updated 13.4 years ago by ★ 6.8k • written 13.4 years ago by ▴ 740
0
votes
2
replies
1.4k
views
distanceToNearest for GRanges?
IRanges GenomicRanges IRanges GenomicRanges
updated 13.4 years ago by ★ 6.8k • written 13.4 years ago by ▴ 740
0
votes
8
replies
2.6k
views
good news and bad news
Infrastructure Cancer IRanges GenomicRanges Infrastructure Cancer IRanges GenomicRanges
updated 13.4 years ago by ★ 13k • written 13.4 years ago by 16k
0
votes
4
replies
3.1k
views
error in exomeCopy - IRanges?
IRanges exomeCopy IRanges exomeCopy
updated 13.5 years ago by ▴ 150 • written 13.5 years ago by ▴ 380
0
votes
8
replies
2.4k
views
IRanges problem: findOverlaps
IRanges IRanges
updated 13.5 years ago by ▴ 50 • written 13.6 years ago by ▴ 20
0
votes
6
replies
2.1k
views
IRanges coverage integer limit?
Coverage IRanges Coverage IRanges
updated 13.6 years ago by 16k • written 13.6 years ago by ★ 1.2k
0
votes
5
replies
2.0k
views
GenomicRanges: nearest() for GRanges not returning overlaps
IRanges IRanges
updated 13.6 years ago by ★ 11k • written 13.6 years ago by ▴ 300
0
votes
4
replies
1.1k
views
Getting the length of every element from a large CompressedIRangesList is slow
IRanges IRanges
13.6 years ago delhomme@embl.de ★ 1.2k
0
votes
11
replies
2.7k
views
nearest() for GRanges
IRanges IRanges
updated 13.6 years ago by 25k • written 13.6 years ago by ▴ 20
0
votes
1
reply
1.8k
views
FW: Overlay Gene Expression on SNP (copy number) data
SNP Coverage Network Cancer TranscriptDb IRanges RCytoscape ggbio Gviz SNP Coverage
updated 13.8 years ago by ★ 4.2k • written 13.8 years ago by ▴ 370
0
votes
1
reply
1.3k
views
seqbias : how to correct weight of mapped short reads?
Coverage IRanges seqbias Coverage IRanges seqbias
updated 13.8 years ago by 25k • written 13.8 years ago by ▴ 230
0
votes
10
replies
2.7k
views
How to convert from IRanges(List) to Rle(List)
convert IRanges convert IRanges
updated 13.8 years ago by 25k • written 13.8 years ago by ★ 1.2k
0
votes
0
replies
839
views
IRAnges compile error
IRanges IRanges
13.9 years ago Francoise.LECOMTE@biogemma.com ▴ 10
0
votes
0
replies
1.3k
views
Installing GenomicRanges require a version of IRanges unavailable
IRanges BiocInstaller IRanges BiocInstaller
14.0 years ago Duhaime Johanne ▴ 100
0
votes
0
replies
1.3k
views
using easyRNASeq examples
RNASeq Annotation BSgenome convert biomaRt BSgenome IRanges DESeq easyRNASeq RNASeq
14.0 years ago delhomme@embl.de ★ 1.2k
0
votes
2
replies
1.2k
views
Integer overflow when summing an 'integer' Rle
Coverage IRanges Coverage IRanges
updated 14.0 years ago by 16k • written 14.0 years ago by ★ 1.2k
0
votes
1
reply
1.1k
views
htSeqTools - filtered reads > BED?
IRanges htSeqTools IRanges htSeqTools
updated 14.0 years ago by ★ 11k • written 14.0 years ago by ▴ 70
0
votes
0
replies
738
views
Bioconductor Digest, Vol 107, Issue 1
SNP Annotation probe affy biomaRt IRanges SNP Annotation probe affy biomaRt IRanges
14.1 years ago Peter Haverty ▴ 20
0
votes
4
replies
6.1k
views
GRanges - coercion from dataframe
convert IRanges convert IRanges
14.2 years ago Fahim Md ▴ 250
0
votes
1
reply
1.8k
views
RE : RE : rsamtools installation
Cancer Biostrings IRanges Rsamtools BiocInstaller Cancer Biostrings IRanges Rsamtools
updated 14.2 years ago by ▴ 140 • written 14.2 years ago by 25k
275 results • Page 4 of 6
Recent ...
Replies
Comment: Open Positions for Doctoral Researchers in Molecular Medicine by TikTs33ssalpc • 0
This rotation style program sounds like a great way to explore different fields before committing to one. Similarly, apkgamex lets users ex…
Comment: Bioconductor Maintainer Application by TikTs33ssalpc • 0
This compliance focused approach makes a lot of sense. Clear reminders and opt in policies help maintain trust, similar to how users look f…
Comment: Bile acid analysis with limpa by ATpoint ★ 5.0k
Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …
Comment: chemmineOB install help by Jeremy • 0
I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k
The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Awards • All
Popular Question to ATpoint ★ 5.0k
Popular Question to Martin Morgan 25k
Teacher to Michael Love 43k
Popular Question to A • 0
Popular Question to Lluís Revilla Sancho ▴ 760
Locations • All
United States, 3 minutes ago
The city by the bay, 4 minutes ago
United States, 28 minutes ago
United States, 34 minutes ago
United States, 2 hours ago
Traffic: 1141 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6