Showing : JunctionSeq • reset
2
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Question: Error when running QoRTs for JunctionSeq
DEXSeq JunctionSeq RNAseq QoRTs
4.8 years ago n.tear ▴ 20
0
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2
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1.4k
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JunctionSeq producing strangely large effect sizes for certain exon counting bins
junctionseq splicing RNAseq DEXSeq
written 6.1 years ago by ▴ 10
0
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1
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1.1k
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JunctionSeq Can't produce Summary Plots
JunctionSeq
8.7 years ago rachelrodgers12 • 0
0
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1.1k
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Setting relevel with the JunctionSeq package
junctionseq relevel reference
8.8 years ago Assa Yeroslaviz ★ 1.5k
1
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0
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1.3k
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JunctionSeq on multiple conditions
junctionseq qorts multiple factor design relevel
8.9 years ago Assa Yeroslaviz ★ 1.5k
0
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1
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1.8k
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JunctionSeq/DEXSeq: Dispersion plot looks strange (but is fine in DESeq2)
deseq2 junctionseq dexseq estimatedispersions rnaseq
updated 9.0 years ago by ★ 13k • written 9.0 years ago by • 0
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Problems running JunctionSeq
junctionseq
9.1 years ago jbono ▴ 10
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1.2k
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JunctionSeq pairwise contrast with a multi-level treatment
junctionseq design and contrast matrix
9.2 years ago stuart • 0
8 results • Page 1 of 1
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Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ATpoint ★ 5.0k
> and I first used the normalized counts You would not use these normalized counts for PCA as they're not on log2 scale. As such, the feat…
Comment: EuroBioC2026 abstract submission is open! by TikTsokaasocissalpc • 0
Submitting abstracts for EuroBioC2026 can be exciting but organizing ideas is key. A Random Word Generator [visit][1] can help create uniqu…
Comment: DESeq2 on non-RNASeq counts data by TikTsokaasocissalpc • 0
In data analysis, behavior differences based on data type are common. Similarly, Best EDI Software adapts to non-standard transaction volum…
Comment: blockwiseModule crashes in the end and doesn't generate modules by gexose2839 • 0
Sounds good. @[time][1] [1]: https://timeduration.github.io
Comment: PFAM formats changed - is it still possible to use this with ISA? by TikTsokaasocissalpc • 0
For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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