Bioconductor JunctionSeq

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1.4k

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DEXSeq JunctionSeq RNAseq QoRTs

3.9 years ago • updated 3.8 years ago n.tear ▴ 20

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1.0k

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junctionseq splicing RNAseq DEXSeq

5.1 years ago stuart ▴ 10

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950

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JunctionSeq

7.7 years ago rachelrodgers12 • 0

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962

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junctionseq relevel reference

7.9 years ago Assa Yeroslaviz ★ 1.5k

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1.1k

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junctionseq qorts multiple factor design relevel

7.9 years ago Assa Yeroslaviz ★ 1.5k

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1.6k

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deseq2 junctionseq dexseq estimatedispersions rnaseq

updated 8.1 years ago by Steve Lianoglou ★ 13k • written 8.1 years ago by l.frank • 0

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952

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junctionseq

8.2 years ago jbono ▴ 10

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996

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junctionseq design and contrast matrix

8.2 years ago stuart • 0

8 results • Page 1 of 1

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Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k

If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…

Comment: org.Hs.eg.db issue by k.panov • 0

installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(

Comment: MBDseq analysis using qsea package by Lukas ▴ 20

Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…

Comment: DESeq2 analysis with transcript counts by sindhuri • 0

Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…

Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k

Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…

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Answer: Issue carrying out DiffBind Analysis at a predefined peak set

Answer: Differential variability modelling with vst() expression

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

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