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JunctionSeq
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2
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2
replies
1.9k
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Question: Error when running QoRTs for JunctionSeq
DEXSeq
JunctionSeq
RNAseq
QoRTs
5.0 years ago • updated 4.9 years ago
n.tear
▴ 20
0
votes
2
replies
1.4k
views
JunctionSeq producing strangely large effect sizes for certain exon counting bins
junctionseq
splicing
RNAseq
DEXSeq
written 6.2 years ago by
stuart
▴ 10
0
votes
1
reply
1.1k
views
JunctionSeq Can't produce Summary Plots
JunctionSeq
8.8 years ago
rachelrodgers12
• 0
0
votes
0
replies
1.2k
views
Setting relevel with the JunctionSeq package
junctionseq
relevel
reference
9.0 years ago
Assa Yeroslaviz
★ 1.5k
1
vote
0
replies
1.3k
views
JunctionSeq on multiple conditions
junctionseq
qorts
multiple factor design
relevel
9.0 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.9k
views
JunctionSeq/DEXSeq: Dispersion plot looks strange (but is fine in DESeq2)
deseq2
junctionseq
dexseq
estimatedispersions
rnaseq
updated 9.1 years ago by
Steve Lianoglou
★ 13k • written 9.1 years ago by
l.frank
• 0
0
votes
0
replies
1.1k
views
Problems running JunctionSeq
junctionseq
9.2 years ago
jbono
▴ 10
0
votes
0
replies
1.2k
views
JunctionSeq pairwise contrast with a multi-level treatment
junctionseq
design and contrast matrix
9.3 years ago
stuart
• 0
8 results • Page
1 of 1
Recent ...
Replies
Comment: Error message that there is no package called Biobase
by
DamionLedner99
• 0
thanks for sharing!!! https://cran.r-project.org/
Answer: Confirm that OpenStats will not be archived (pryr dependency)
by
man
• 0
The best AI-powered image editor <a href='https://nanobananaart.net>[Nano Banana][1]</a> for both image and text in 2025. [1]: http…
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC
by
Ben
• 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis
by
James W. MacDonald
68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
varying.mastodon.isyn
• 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Votes
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
Answer: Confused about the CPM and TMM normalization in edgeR
A: DESeq2 - VST eliminates zero values
Comment: Normalise to a housekeeping gene in DESEq2
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