Bioconductor JunctionSeq

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925

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DEXSeq JunctionSeq RNAseq QoRTs

2.6 years ago • updated 2.5 years ago n.tear ▴ 20

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668

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junctionseq splicing RNAseq DEXSeq

3.8 years ago stuart ▴ 10

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730

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JunctionSeq

6.4 years ago rachelrodgers12 • 0

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706

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junctionseq relevel reference

6.6 years ago Assa Yeroslaviz ★ 1.5k

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812

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junctionseq qorts multiple factor design relevel

6.6 years ago Assa Yeroslaviz ★ 1.5k

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1.2k

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deseq2 junctionseq dexseq estimatedispersions rnaseq

updated 6.8 years ago by Steve Lianoglou 13k • written 6.8 years ago by l.frank • 0

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727

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junctionseq

6.9 years ago jbono ▴ 10

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689

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junctionseq design and contrast matrix

6.9 years ago stuart • 0

8 results • Page 1 of 1

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Comment: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar by James W. MacDonald 63k

I should also point out that you can find this out by yourself by going to [ensembl][1], clicking on the Biomart link, and then scrolling t…

Answer: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar by James W. MacDonald 63k

It's my understanding that the archived Biomart data are not complete, which is likely why you cannot get sequences. But you apparently jus…

Comment: ComBat_seq function in sva package does not return a matrix by Federico ▴ 10

Thanks for your help, problem solved :)

Answer: ComBat_seq function in sva package does not return a matrix by ATpoint ★ 3.4k

That happens if your `x` is a data.frame rather than a matrix. It is listed under the Q&A section in https://github.com/zhangyuqing/ComBat-…

Answer: error running exp2grn by Fabricio Almeida-Silva ▴ 40

Hi, Adriana. It seems like the gene IDs you specified in `Host13tfs$Protein.ID` do not match any gene IDs in the row names of your expr…

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ComBat_seq function in sva package does not return a matrix

Answer: ComBat_seq function in sva package does not return a matrix

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Teacher to ATpoint ★ 3.4k