Showing : LIMMA • reset
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limma Intercept vs No-intercept models completely changing DMR results?
limma DMRcate MethylationArray EPICV2
updated just now by 65k • written 1 hour ago by • 0
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Gene-by-sample covariates in limma
Metabolomics limma
updated 23 hours ago by 50k • written 1 day ago by • 0
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Help with error using camera() in limma
CAMERA limma
3 days ago Chris • 0
0
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3
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215
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Assist me in determining whether the analysis process using the limma package has been executed correctly.
GEOquery ArrayExpress limma DifferentialExpression
updated 3 days ago by 65k • written 4 days ago by • 0
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limma-voom: Calculate the log-fold change in gene expression within a sample
limma RNASeq voom
written 10 days ago by • 0
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Why p value inconsistent when using different number of pathway score?
limma
13 days ago • updated 2 days ago Chris • 0
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1.9k
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The difference when using Limma compare between 3 conditions vs 2 conditions
limma
5 weeks ago • updated 3 days ago Chris • 0
2
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2
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1.1k
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limma for gene expression analysis with big and unbalanced sample size
limma microarray statistics
updated 3 days ago by • 0 • written 7.9 years ago by • 0
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3
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Limma, eBayes different sample size of groups and adjustment
limma limma
updated 3 days ago by • 0 • written 13.0 years ago by ▴ 10
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Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Answer: Too many significant genes when integrating gtex and tcga by James W. MacDonald 65k
See `?results`, in particular the lfcThreshold argument.
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis by Aurora • 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
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Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
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