Bioconductor EPICV2

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1.6k

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EpicV2 ChAMPdata

updated 11 weeks ago by icecreamlover • 0 • written 3 months ago by nurkenber • 0

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3.1k

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ChAMP EPICv2

updated 3 months ago by Ricky • 0 • written 19 months ago by medha.suman • 0

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215

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EpicV2 DMRcate

3 months ago kitzhu • 0

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1.1k

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sesame EPICv2manifest epicv2

7 months ago luca.s ▴ 50

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721

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sesameData EPICv2 EPICv1

updated 3 months ago by zhouwanding ▴ 20 • written 7 months ago by archibold.mposhi • 0

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820

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limma DMRcate MethylationArray EPICV2

updated 8 months ago by Gordon Smyth 52k • written 8 months ago by Kim • 0

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1.6k

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DNAMethylation GO MethylationArray missMethyl EPICv2

10 months ago • updated 4 months ago s.malik • 0

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1.5k

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DNAMethylation EPICv2 IlluminaHumanMethylationEPICmanifest

updated 11 months ago by James W. MacDonald 67k • written 11 months ago by rae.alshammari ▴ 10

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2.4k

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ChAMP EPICv2

updated 11 weeks ago by icecreamlover • 0 • written 12 months ago by ChunkyJones • 0

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1.6k

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sesame IlluminaHumanMethylationEPICv2anno.20a1.hg38 methylationEPICv2.0 EpicV2

updated 10 months ago by aldea85 • 0 • written 14 months ago by Courtney • 0

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2.7k

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minfiDataEPIC EpicV2

updated 16 months ago by Zuguang Gu ▴ 290 • written 17 months ago by Izabela.ams • 0

11 results • Page 1 of 1

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Answer: Postdoc/RA position: Software Engineer For R and High-Performance Computing by delhirussianescortscom • 0

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Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…

Answer: Selection of correct coefficients or contrasts in DESeq2 by James W. MacDonald 67k

Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…

Comment: How to generate circular cnetplot and color nodes and edges in the same plot ? by Blandine • 0

Thank you so much ! It's working !

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by James W. MacDonald 67k

Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…

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A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

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