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Showing :
Limma
•
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15
votes
22
replies
1.8k
views
The difference when using Limma compare between 3 conditions vs 2 conditions
limma
27 days ago • updated 5 days ago
Chris
• 0
12
votes
12
replies
777
views
Why p value inconsistent when using different number of pathway score?
limma
updated 4 days ago by
Robert Castelo
★ 3.3k • written 5 days ago by
Chris
• 0
5
votes
9
replies
859
views
Light difference when using coef vs omit a group when compare 3 groups.
limma
15 days ago • updated 7 days ago
Chris
• 0
5
votes
25
replies
825
views
limma models out of memory issue on Slurm HPC
Regression
limma
STATISITICS
HPC
updated 21 days ago by
Gordon Smyth
50k • written 4 weeks ago by
Jitendra
▴ 10
5
votes
8
replies
8.8k
views
Limma design with continuous and categorical covariates
limma
batch effect
covariates
microarray
updated 2 days ago by
hortense96
• 0 • written 7.7 years ago by
dmcleanuk
▴ 30
5
votes
7
replies
430
views
DEG Filtering
MicroarrayData
limma
Genefiltering
updated 29 days ago by
Gordon Smyth
50k • written 5 weeks ago by
Amit
• 0
5
votes
9
replies
1.2k
views
Batch correction and repeated measures
RUVSeq
sva
limma
updated 8 days ago by
Gordon Smyth
50k • written 7 months ago by
Jonathan
▴ 10
3
votes
1
reply
120
views
Log-cpm values from limma
limma
edgeR
RNASeq
updated 6 days ago by
Gordon Smyth
50k • written 7 days ago by
Shaimaa Gamal
• 0
2
votes
8
replies
496
views
Microarray Limma Model fitting and DEG
limma
DGEanalysis
updated 29 days ago by
Gordon Smyth
50k • written 4 weeks ago by
Amit
• 0
2
votes
6
replies
350
views
How to make boxplot with pairwise and overall p value from Limma
t.test
boxplot
limma
anova
17 days ago
Chris
• 0
1
vote
4
replies
415
views
Using a change in a continuous explanatory variable to test changes in gene expression with limma
limma
updated 21 days ago by
Gordon Smyth
50k • written 22 days ago by
jari.karppinen
• 0
1
vote
3
replies
324
views
Why is my gene not significantly differentially expressed?
limmaGUI
edgeR
limma
updated 10 days ago by
Gordon Smyth
50k • written 15 days ago by
Simran
• 0
0
votes
4
replies
291
views
Help with design.matrix
limma
20 days ago • updated 19 days ago
andrea.rodriguez-martinez13
• 0
0
votes
1
reply
147
views
Limma design matrix only showing 3/4 treatments?
limma
designmatrix
updated 19 days ago by
Gordon Smyth
50k • written 20 days ago by
avery
• 0
0
votes
1
reply
94
views
limma-voom: Calculate the log-fold change in gene expression within a sample
limma
RNASeq
voom
updated 3 days ago by
Gordon Smyth
50k • written 3 days ago by
taur.vil
• 0
0
votes
4
replies
572
views
How to correct for known and surrogate variables in DESeq2?
DESeq2
BatchEffect
sva
limma
updated 9 days ago by
Michael Love
41k • written 6 months ago by
Crystal571
• 0
0
votes
2
replies
154
views
RNAseq:Technical replicates from different batches
technicalReplicates
BatchEffect
limma
RNASeq
6 days ago • updated 3 days ago
catv
• 0
0
votes
6
replies
3.1k
views
limma, analysis on subset of data gives completely different results
limma
limma
updated 23 days ago by
Gordon Smyth
50k • written 9.8 years ago by
Arvid Sondén
▴ 40
0
votes
2
replies
174
views
voom(calcNormFactors()) for normalization of RNAseq counts for WGCNA
Voom
Limma
WGCNA
22 days ago
Gimena
• 0
0
votes
7
replies
252
views
Methylation Analysis experiment design using Limma
DNAMethylation
limma
methylationArrayAnalysis
8 days ago • updated 2 days ago
hortense96
• 0
20 results • Page
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Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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Gordon Smyth
50k
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Chris
• 0
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Jonathan
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