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anova
•
reset
2
votes
2
replies
352
views
2-Way Repeated Measures ANOVA - Affymetrix
AffymetrixChip
MicroarrayData
Anova
11 months ago
evan.j.williams
▴ 10
3
votes
4
replies
1.1k
views
Pipeline for an Anova-like analysis in edgeR
edgeR
anova
rna-seq
2.4 years ago
Antonio M.
• 0
2
votes
3
replies
882
views
ANOVA Limma
ANOVA
limma
updated 2.6 years ago by
James W. MacDonald
63k • written 2.6 years ago by
georgina.fqw
▴ 10
1
vote
1
reply
603
views
DESeq2 interactions genotype condition code needed
DESeq2
anova
condition
genotypeeval
updated 2.8 years ago by
ATpoint
★ 3.4k • written 2.8 years ago by
Dan
▴ 20
2
votes
4
replies
2.1k
views
Compare 3 RNASeq groups with no control in DESeq2
anova
RNASeqData
tukeyTest
DESeq2
2.8 years ago
ecg1g15
▴ 20
5
votes
13
replies
2.1k
views
DESeq2 multiple group comparison (ANOVA) with batch effect
DESeq2
DEG
ANOVA
Batch effect
Comparison
updated 4.1 years ago by
Michael Love
40k • written 4.1 years ago by
amin.ghareyazi
• 0
3
votes
3
replies
1.5k
views
Differential Expression Analysis in edgeR using Anova
edger
anova
gene expression
Dispersion
updated 4.2 years ago by
onlychainsaw2019
• 0 • written 4.7 years ago by
ilovesuperheroes1993
• 0
0
votes
1
reply
1.3k
views
edgeR 2-way ANOVA testing
edger
ANOVA
updated 4.9 years ago by
Gordon Smyth
48k • written 4.9 years ago by
martyna.broda
• 0
5
votes
6
replies
1.1k
views
nestedF in decideTests: an analogue of Anova with post-hoc t-tests?
limma
anova
decidetests
updated 5.0 years ago by
Gordon Smyth
48k • written 5.0 years ago by
mikhael.manurung
▴ 270
3
votes
1
reply
900
views
ANOVA-like test via treat() in limma
limma
anova
updated 5.1 years ago by
Gordon Smyth
48k • written 5.2 years ago by
k.vitting.seerup
▴ 120
1
vote
1
reply
683
views
Getting Significance for second factor (bioreplicate/subject) when using limma.
limma
anova
updated 5.3 years ago by
Aaron Lun
★ 28k • written 5.3 years ago by
wewolski
▴ 10
1
vote
1
reply
614
views
How to calculate one way unpaired Anova test with multi column data in R
Anova
updated 5.5 years ago by
James W. MacDonald
63k • written 5.5 years ago by
raya.girish
• 0
1
vote
8
replies
1.2k
views
design versus interaction term similarities and/or differences?
deseq2
ANOVA
design
interaction term
updated 5.6 years ago by
Michael Love
40k • written 5.6 years ago by
tarun2
• 0
0
votes
3
replies
1.1k
views
Anova test on gene expression data
Anova
gene expression
updated 5.9 years ago by
James W. MacDonald
63k • written 5.9 years ago by
sally_b86
• 0
2
votes
6
replies
1.8k
views
Three way-interaction on voom (limma) data, including a factor with > 2 levels
RNASeq
limma
voom
anova
updated 19 months ago by
tcalvo
▴ 90 • written 6.2 years ago by
David R
▴ 70
2
votes
2
replies
1.9k
views
EdgeR -ANOVA-like test vs testing individual contrasts
EdgeR
ANOVA
t-test
contrast
updated 6.3 years ago by
Aaron Lun
★ 28k • written 6.3 years ago by
Maiv
• 0
0
votes
6
replies
3.9k
views
How to perform ANOVA to calculate differential gene expression with three categories
anova
updated 6.3 years ago by
Gordon Smyth
48k • written 6.3 years ago by
pbachali
▴ 50
2
votes
3
replies
1.9k
views
edgeR ANOVA-like analysis
edger
rnaseq
anova
updated 6.5 years ago by
Aaron Lun
★ 28k • written 6.5 years ago by
Tony
• 0
1
vote
4
replies
1.2k
views
DESeq2 ANOVADEV giving strange result
deseq2
anova
updated 6.9 years ago by
Michael Love
40k • written 6.9 years ago by
szenitha
▴ 20
3
votes
3
replies
1.8k
views
Explanation of an ANOVA approach of multiple coefficients in limma with topTable in a microarray analysis
limma
ANOVA
topTable
microarray
updated 7.0 years ago by
Gordon Smyth
48k • written 7.0 years ago by
Konstantinos Yeles
▴ 80
0
votes
5
replies
1.5k
views
MetagenomSeq, perform anova or kruskall wallis with three groups ?
metagenomeseq
anova
metagenomics
7.4 years ago
David
▴ 860
3
votes
4
replies
1.5k
views
how to use edgeR analysis RNA-seq data with a obvious deviation sample
edger
RNA-seq
anova
updated 7.5 years ago by
Aaron Lun
★ 28k • written 7.5 years ago by
xiaoaozqd
• 0
2
votes
4
replies
1.3k
views
Complex ANOVA analysis in EdgeR
edger
anova
sequencing
updated 7.6 years ago by
Aaron Lun
★ 28k • written 7.6 years ago by
kmyers2
• 0
2
votes
1
reply
3.3k
views
RNA-seq Differential expression using 3 groups
rnaseq
anova
deseq2
edger
genespring
8.2 years ago
BM
• 0
3
votes
14
replies
3.7k
views
Moderated t-test in Anova
anova
moderated t-test
updated 8.3 years ago by
Gordon Smyth
48k • written 8.3 years ago by
shaheryar
• 0
8
votes
4
replies
5.3k
views
Multiple Comparisons EdgeR
edger
multiple comparisons
anova
glm
updated 8.3 years ago by
Ryan C. Thompson
7.8k • written 8.3 years ago by
chickenchamp4
▴ 20
4
votes
2
replies
8.7k
views
DESeq2 LRT output help
deseq2
LRT
anova
8.4 years ago
rclaire
▴ 20
3
votes
1
reply
1.4k
views
edgeR: glmLRT equivalence between tests with cell means model and factor levels model
edger
anova
updated 8.4 years ago by
Aaron Lun
★ 28k • written 8.4 years ago by
mmclean
• 0
2
votes
8
replies
3.3k
views
EdgeR. Analysis with pairing across condition and treatment. Design Matrix
edger
ANOVA
Design matrix
updated 8.7 years ago by
Gordon Smyth
48k • written 8.7 years ago by
chwhite
• 0
3
votes
2
replies
2.3k
views
EdgeR User Guide. Analysis with multiple factors. Section 3.3.1
edger
anova
updated 8.7 years ago by
Gordon Smyth
48k • written 8.7 years ago by
chwhite
• 0
3
votes
3
replies
9.3k
views
DESeq2 One-way ANOVA with 3 sample groups?
deseq2
Anova
updated 22 months ago by
Michael Love
40k • written 9.0 years ago by
alex.pelletier
▴ 10
31 results • Page
1 of 1
Recent ...
Replies
Comment: LIMMA dupcor() function time issue.
by
Gordon Smyth
48k
That's ok, but there is nothing to be gained by subsetting 1000 times. It would be better to simply subset 100,000 rows once, although the …
Comment: Specifying evidence channels in STRINGdb
by
robynne.braun
• 0
Also I found prior thread here addressing the same question with response that functionality will be supported someday. This was a few year…
Comment: Problems with FLOWAI
by
SHASHI
• 0
please try this using short path name and keeping your fcs file and wsp file in your local directory https://youtu.be/xLeqE7PNYzA
Comment: DataFrame Construction With Non-standard Column
by
Hervé Pagès
16k
SimpleList is a List derivative and List derivatives in general don't need protection. For example, a GRangesList object (which is also a L…
Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu
by
swbarnes2
★ 1.3k
The Status grouping you show above is good to use if you want to simply compare one subset of samples to another subset. The ~Genotype +…
Votes
Answer: Deseq2, enrichGO and ensembl ID
A: LIMMA dupcor() function time issue.
A: LIMMA dupcor() function time issue.
Answer: Further analysis after limma regression output
A: collapseReplicates in DESeq2
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