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anova
•
reset
3
votes
4
replies
494
views
Pipeline for an Anova-like analysis in edgeR
edgeR
anova
rna-seq
13 months ago
Antonio M.
• 0
2
votes
3
replies
349
views
ANOVA Limma
ANOVA
limma
updated 15 months ago by
James W. MacDonald
59k • written 15 months ago by
georgina.fqw
▴ 10
1
vote
1
reply
330
views
DESeq2 interactions genotype condition code needed
DESeq2
anova
condition
genotypeeval
updated 17 months ago by
ATpoint
★ 1.2k • written 17 months ago by
Dan
▴ 10
2
votes
4
replies
863
views
Compare 3 RNASeq groups with no control in DESeq2
anova
RNASeqData
tukeyTest
DESeq2
18 months ago
ecg1g15
• 0
5
votes
13
replies
1.1k
views
DESeq2 multiple group comparison (ANOVA) with batch effect
DESeq2
DEG
ANOVA
Batch effect
Comparison
updated 2.8 years ago by
Michael Love
37k • written 2.8 years ago by
amin.ghareyazi
• 0
3
votes
3
replies
1.1k
views
Differential Expression Analysis in edgeR using Anova
edger
anova
gene expression
Dispersion
updated 2.9 years ago by
onlychainsaw2019
• 0 • written 3.4 years ago by
ilovesuperheroes1993
• 0
0
votes
1
reply
862
views
edgeR 2-way ANOVA testing
edger
ANOVA
updated 3.5 years ago by
Gordon Smyth
45k • written 3.5 years ago by
martyna.broda
• 0
5
votes
6
replies
669
views
nestedF in decideTests: an analogue of Anova with post-hoc t-tests?
limma
anova
decidetests
updated 3.7 years ago by
Gordon Smyth
45k • written 3.7 years ago by
mikhael.manurung
▴ 240
3
votes
1
reply
633
views
ANOVA-like test via treat() in limma
limma
anova
updated 3.8 years ago by
Gordon Smyth
45k • written 3.8 years ago by
k.vitting.seerup
▴ 100
1
vote
1
reply
440
views
Getting Significance for second factor (bioreplicate/subject) when using limma.
limma
anova
updated 4.0 years ago by
Aaron Lun
★ 27k • written 4.0 years ago by
wewolski
▴ 10
1
vote
1
reply
423
views
How to calculate one way unpaired Anova test with multi column data in R
Anova
updated 4.1 years ago by
James W. MacDonald
59k • written 4.1 years ago by
raya.girish
• 0
1
vote
8
replies
752
views
design versus interaction term similarities and/or differences?
deseq2
ANOVA
design
interaction term
updated 4.3 years ago by
Michael Love
37k • written 4.3 years ago by
tarun2
• 0
0
votes
3
replies
724
views
Anova test on gene expression data
Anova
gene expression
updated 4.5 years ago by
James W. MacDonald
59k • written 4.5 years ago by
sally_b86
• 0
2
votes
6
replies
1.3k
views
Three way-interaction on voom (limma) data, including a factor with > 2 levels
RNASeq
limma
voom
anova
updated 11 weeks ago by
tcalvo
▴ 70 • written 4.9 years ago by
David Rengel
▴ 70
2
votes
2
replies
1.5k
views
EdgeR -ANOVA-like test vs testing individual contrasts
EdgeR
ANOVA
t-test
contrast
updated 4.9 years ago by
Aaron Lun
★ 27k • written 4.9 years ago by
Maiv
• 0
0
votes
6
replies
3.0k
views
How to perform ANOVA to calculate differential gene expression with three categories
anova
updated 4.9 years ago by
Gordon Smyth
45k • written 4.9 years ago by
pbachali
▴ 20
2
votes
3
replies
1.6k
views
edgeR ANOVA-like analysis
edger
rnaseq
anova
updated 5.2 years ago by
Aaron Lun
★ 27k • written 5.2 years ago by
Tony
• 0
1
vote
4
replies
774
views
DESeq2 ANOVADEV giving strange result
deseq2
anova
updated 5.6 years ago by
Michael Love
37k • written 5.6 years ago by
szenitha
• 0
3
votes
3
replies
1.3k
views
Explanation of an ANOVA approach of multiple coefficients in limma with topTable in a microarray analysis
limma
ANOVA
topTable
microarray
updated 5.7 years ago by
Gordon Smyth
45k • written 5.7 years ago by
Konstantinos Yeles
▴ 70
0
votes
5
replies
1.1k
views
MetagenomSeq, perform anova or kruskall wallis with three groups ?
metagenomeseq
anova
metagenomics
6.0 years ago
David
▴ 860
3
votes
4
replies
1.2k
views
how to use edgeR analysis RNA-seq data with a obvious deviation sample
edger
RNA-seq
anova
updated 6.1 years ago by
Aaron Lun
★ 27k • written 6.2 years ago by
xiaoaozqd
• 0
2
votes
4
replies
999
views
Complex ANOVA analysis in EdgeR
edger
anova
sequencing
updated 6.2 years ago by
Aaron Lun
★ 27k • written 6.2 years ago by
kmyers2
• 0
2
votes
1
reply
2.6k
views
RNA-seq Differential expression using 3 groups
rnaseq
anova
deseq2
edger
genespring
6.8 years ago
BM
• 0
3
votes
14
replies
3.0k
views
Moderated t-test in Anova
anova
moderated t-test
updated 7.0 years ago by
Gordon Smyth
45k • written 7.0 years ago by
shaheryar
• 0
7
votes
4
replies
4.3k
views
Multiple Comparisons EdgeR
edger
multiple comparisons
anova
glm
updated 7.0 years ago by
Ryan C. Thompson
7.8k • written 7.0 years ago by
chickenchamp4
▴ 10
0
votes
2
replies
7.7k
views
DESeq2 LRT output help
deseq2
LRT
anova
7.0 years ago
rclaire
• 0
3
votes
1
reply
1.2k
views
edgeR: glmLRT equivalence between tests with cell means model and factor levels model
edger
anova
updated 7.0 years ago by
Aaron Lun
★ 27k • written 7.0 years ago by
mmclean
• 0
2
votes
8
replies
2.6k
views
EdgeR. Analysis with pairing across condition and treatment. Design Matrix
edger
ANOVA
Design matrix
updated 7.3 years ago by
Gordon Smyth
45k • written 7.3 years ago by
chwhite
• 0
3
votes
2
replies
1.9k
views
EdgeR User Guide. Analysis with multiple factors. Section 3.3.1
edger
anova
updated 7.3 years ago by
Gordon Smyth
45k • written 7.3 years ago by
chwhite
• 0
3
votes
3
replies
7.7k
views
DESeq2 One-way ANOVA with 3 sample groups?
deseq2
Anova
updated 6 months ago by
Michael Love
37k • written 7.7 years ago by
alex.pelletier
▴ 10
30 results • Page
1 of 1
Recent ...
Replies
Comment: CPM after RUVseq
by
Jess
• 0
Thank you, it was!
Answer: unable to install RBGL
by
James W. MacDonald
59k
That might have been transitory. If you try again, does it work, or is it consistent?
Comment: error with: .make_splicings <- function(exons, cds, stop_codons=NULL)
by
James W. MacDonald
59k
It's not clear from this what the problem is. Rather than running under `snakemake` you might run the R code directly. I mean it's obvious …
Comment: CPM after RUVseq
by
James W. MacDonald
59k
I am unfamiliar with a `counts` function (your `counts(set)`), so it's not clear what exactly you are putting into that `DGEList`. But if i…
Comment: error with: .make_splicings <- function(exons, cds, stop_codons=NULL)
by
rsnorman
• 0
Thanks for the advice! I need to use this particular bacterial strain, but I did locate a more recent annotation for it and that cleared th…
Votes
Comment: CPM after RUVseq
A: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
Answer: CPM after RUVseq
Comment: Merging two plated in R
Answer: Merging two plated in R
Awards
• All
Scholar
to
Guido Hooiveld
★ 3.2k
Teacher
to
Gordon Smyth
45k
Teacher
to
Aaron Lun
★ 27k
Scholar
to
James W. MacDonald
59k
Popular Question
to
Lluís Revilla Sancho
▴ 660
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