Bioconductor LongRead

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RNASeq edgeR LongRead Transcript

5 weeks ago mohammedtoufiq91 ▴ 10

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DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 17 months ago by Michael Love 43k • written 17 months ago by 09191919 • 0

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Rsubread LongRead

23 months ago mmisak • 0

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NanoporeRNASeq LongRead Normalization ShortRead IlluminaRNASeq

updated 14 months ago by callumjcparr • 0 • written 2.6 years ago by Bernardo ▴ 10

4 results • Page 1 of 1

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Comment: readDNAStringSet with non DNA characters by biomiha ▴ 20

DECIPHER does the trick, thank you!

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by James W. MacDonald 68k

It may not be that common for bulk RNA-Seq, but in my experience it's very common for bulk miRNA-Seq.

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0

Nice. That's great to hear. `sva` was actually the next step I was planning to try. My colleagues haven't seen this kind of pattern before …

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by James W. MacDonald 68k

It is not uncommon for library size to be apparent in an MDS plot. You can use `sva` or `RUV` to account for that.

Comment: p-adjusted values in multiple comparisons by Josh • 0

Yes, using lmFit with block and duplicateCorrelation is appropriate; mobile data collection can illustrate blocking importance. First estim…

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Comment: readDNAStringSet with non DNA characters

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

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