Bioconductor PlotMDS

Showing : plotMDS • reset

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plotMDS limma

8 months ago Cen • 0

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1.7k

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plotMDS limma

updated 10 months ago by Gordon Smyth 50k • written 10 months ago by liujy4 • 0

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1.2k

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plotMDS PCA RNASeq MDS

updated 2.1 years ago by Gordon Smyth 50k • written 2.1 years ago by Raito92 ▴ 60

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1.2k

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limma plotMDS

2.7 years ago jamie.gearing ▴ 60

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3.7k

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edgeR plotmds differential gene expression MDS mdsplot

updated 5.3 years ago by Gordon Smyth 50k • written 5.3 years ago by ilovesuperheroes1993 • 0

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720

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plotMDS Cell lines limma

updated 5.6 years ago by Gordon Smyth 50k • written 5.6 years ago by Alexander Azarian ▴ 30

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910

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tree bootstrap dgelist plotmds

6.1 years ago Larry K. • 0

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5.7k

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limma edger plotmds tmm masigpro

6.3 years ago dacaba.92 ▴ 10

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1.5k

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edger plotmds

6.6 years ago fawazfebin ▴ 60

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1.9k

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edger plotmds

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by mictadlo ▴ 10

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1.6k

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affymetrix microarrays sva combat sva batch effect plotMDS

updated 7.6 years ago by Jeff Leek ▴ 650 • written 7.6 years ago by svlachavas ▴ 830

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1.1k

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rgl plot3d plotmds

8.0 years ago Adam • 0

12 results • Page 1 of 1

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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

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Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

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