Bioconductor Covariate

Showing : covariate • reset

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507

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deseq2 DEG covariate study design variables

updated 3.2 years ago by Michael Love 40k • written 3.3 years ago by Yonatan Amzaleg • 0

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709

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DEG deseq2 Covariate

updated 4.0 years ago by Michael Love 40k • written 4.0 years ago by sum732 • 0

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775

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limma covariate

updated 4.2 years ago by Gordon Smyth 47k • written 4.2 years ago by scheran02 • 0

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1.0k

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limma methylation R covariate MDS

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by RC • 0

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1.5k

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limma voom batcheffect covariate

updated 6.1 years ago by Gordon Smyth 47k • written 6.1 years ago by raf4 ▴ 20

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3.0k

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edger contrast covariate glmlrt()

6.1 years ago Jeff Skinner • 0

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1.1k

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limma paired covariate

updated 7.0 years ago by Steve Lianoglou 13k • written 7.0 years ago by meeta.mistry ▴ 30

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4.5k

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RNA rnaseq Covariate adjustment deseq

updated 7.3 years ago by Michael Love 40k • written 7.3 years ago by sjs0282 • 0

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2.2k

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limma pre/post continous covariate

7.4 years ago Smeeta Shrestha ▴ 20

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2.1k

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edger differential expression covariate batch effect glm

updated 7.4 years ago by Gordon Smyth 47k • written 7.4 years ago by aec ▴ 90

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2.4k

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limma covariate block paired samples technical replicates

updated 7.5 years ago by Aaron Lun ★ 28k • written 7.5 years ago by eleonoregravier ▴ 60

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4.4k

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limma spline design and contrast matrix covariate

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.8 years ago by Hilary ▴ 30

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4.3k

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covariate deseqdataset Deseq2 multiple factor design

updated 7.8 years ago by Michael Love 40k • written 7.8 years ago by Lillyhchen ▴ 10

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5.8k

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limma covariate continuous categorical adjustment

updated 7.9 years ago by Gordon Smyth 47k • written 7.9 years ago by sg45653 • 0

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4.0k

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limma reference group covariate

8.4 years ago alakatos ▴ 120

15 results • Page 1 of 1

Recent ...

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Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Gordon Smyth 47k

Perhaps you are thinking of data analyses where the dependent variable is something other than expression itself. In the context of gene e…

Comment: Interpret plot from DiffBind by Chris • 0

If I want to find genes that are more open in diseased than control, I can filter out peaks that have highest log2Fold change like this, is…

Comment: Interpret plot from DiffBind by Chris • 0

Hi Rory. There are so many red dot above and below the blue line so it is hard to know which condition are more open, is that correct? Is 1…

Comment: Extract Limma Adjusted Values for Plotting by phelankj • 0

Thanks, on the normalized values using the same formula?

Answer: Extract Limma Adjusted Values for Plotting by James W. MacDonald 63k

You should use `removeBatchEffect` for that.

Votes

Answer: NA transcript values in my Txdb

Comment: Interpret plot from DiffBind

Answer: Use with_go along with other filters in getBM function

Answer: Interpret plot from DiffBind

Awards • All

Scholar to Mike Smith ★ 6.0k