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MDS
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11
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15
replies
2.7k
views
edgeR - MDS Plot for Count Data
edger
DEG
mds
plot
6.7 years ago
baus87
• 0
4
votes
3
replies
2.6k
views
Saving MDS scores
MDS
edger
updated 8.4 years ago by
Gordon Smyth
50k • written 9.4 years ago by
tobler
• 0
0
votes
2
replies
1.4k
views
should i include PCs or MDSs as covariates in methylation study?
limma
methylation
R
covariate
MDS
updated 7.0 years ago by
Aaron Lun
★ 28k • written 7.0 years ago by
RC
• 0
2
votes
8
replies
3.8k
views
MDS Plot help in edgeR
edgeR
plotmds
differential gene expression
MDS
mdsplot
updated 5.3 years ago by
Gordon Smyth
50k • written 5.3 years ago by
ilovesuperheroes1993
• 0
2
votes
2
replies
967
views
How to deal with stronger effect by donor than treatment
MDS
RNA-Seq
updated 21 months ago by
Gordon Smyth
50k • written 21 months ago by
Pei
• 0
2
votes
2
replies
1.2k
views
Make samples symbols bigger in PCA / MDS analysis with plotMDS function
plotMDS
PCA
RNASeq
MDS
updated 2.1 years ago by
Gordon Smyth
50k • written 2.1 years ago by
Raito92
▴ 60
1
vote
1
reply
1.6k
views
How to inteprate distances calculated by cmdscale?
differential gene expression
cmdscale
mds
8.0 years ago
Adam
• 0
0
votes
0
replies
1.2k
views
ChAMP MDS 1000 most variable positions
champ
MDS
8.4 years ago
Eric Smith
• 0
8 results • Page
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Comment: Why p value inconsistent when using different number of pathway score?
by
Chris
• 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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