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MNN
•
reset
3
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6
replies
3.1k
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Carry over variable features when converting FastMNN SCE object to Seurat object
mnn
batchelor
scrna-seq
seurat
updated 4.2 years ago by
Aaron Lun
★ 28k • written 4.2 years ago by
heir_of_isildur88
• 0
0
votes
2
replies
1.0k
views
Help with the output from mnnCorrect
mnnCorect
MNN
4.8 years ago
sharvari gujja
▴ 40
2
votes
2
replies
1.7k
views
Subclustering after MNN batch-correction
batchelor
mnn
scrna-seq
updated 24 months ago by
Guandong Shang
▴ 40 • written 4.5 years ago by
heir_of_isildur88
• 0
2
votes
1
reply
2.1k
views
Batch Corrections (MNN) with TPM values
scRNA-Seq
scater
scran
rna-seq
MNN
updated 4.8 years ago by
Aaron Lun
★ 28k • written 4.8 years ago by
hamza_karakurt
▴ 60
4 results • Page
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Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Lluís Revilla Sancho
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maltethodberg
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