Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
MNN
•
reset
3
votes
6
replies
3.9k
views
Carry over variable features when converting FastMNN SCE object to Seurat object
mnn
batchelor
scrna-seq
seurat
updated 5.0 years ago by
Aaron Lun
★ 28k • written 5.0 years ago by
heir_of_isildur88
• 0
2
votes
2
replies
2.4k
views
Subclustering after MNN batch-correction
batchelor
mnn
scrna-seq
updated 2.8 years ago by
Guandong Shang
▴ 40 • written 5.4 years ago by
heir_of_isildur88
• 0
0
votes
2
replies
1.2k
views
Help with the output from mnnCorrect
mnnCorect
MNN
5.6 years ago
sharvari gujja
▴ 40
2
votes
1
reply
2.6k
views
Batch Corrections (MNN) with TPM values
scRNA-Seq
scater
scran
rna-seq
MNN
updated 5.6 years ago by
Aaron Lun
★ 28k • written 5.6 years ago by
hamza_karakurt
▴ 60
4 results • Page
1 of 1
Recent ...
Replies
Answer: Typo in the help of lmFit()
by
Gordon Smyth
52k
Thanks for the heads-up. > The _Details_ in the documentation of lmFit() still says that the default correlation is 0.75 Yes, you're righ…
Comment: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
by
caroline.zanchi
▴ 10
Thank you ! ![enter image description here][1] In the end I did ```r rn2 <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "GENENAME"…
Answer: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin
by
James W. MacDonald
68k
The obvious solution is to use cloud computing, which is likely cheaper than getting more RAM for your computer.
Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
by
James W. MacDonald
68k
``` library(org.Dm.eg.db) rn <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "SYMBOL","FLYBASE") ## ensure no NA values get propaga…
Comment: Discrepancies in normalised count data vs unnormalised
by
AMgroup
• 0
Thank you for your explanation, that makes sense. Do you have any suggestions on how to deal with this issue? if it is an issue? especially…
Votes
Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
Comment: Check removeBatchEffect effectiveness
Answer: Check removeBatchEffect effectiveness
Awards
• All
Popular Question
to
favorov
• 0
Popular Question
to
bhanu.chandra1
• 0
Popular Question
to
James W. MacDonald
68k
Popular Question
to
shepherl
4.1k
Popular Question
to
massimo
• 0
Locations
• All
United States,
42 minutes ago
WEHI, Melbourne, Australia,
1 hour ago
Australia/Melbourne/Monash University Genomics and Bioinformatics Platform,
1 hour ago
Germany,
2 hours ago
Pittsburgh, United States,
4 hours ago
Traffic: 576 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6