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batchelor mnn scrna-seq

updated 3.5 years ago by Guandong Shang ▴ 40 • written 6.0 years ago by heir_of_isildur88 • 0

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mnn batchelor scrna-seq seurat

updated 5.7 years ago by Aaron Lun ★ 29k • written 5.7 years ago by heir_of_isildur88 • 0

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scRNA-Seq scater scran rna-seq MNN

updated 6.3 years ago by Aaron Lun ★ 29k • written 6.3 years ago by hamza_karakurt ▴ 60

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mnnCorect MNN

6.3 years ago sharvari gujja ▴ 40

4 results • Page 1 of 1

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Comment: Bile acid analysis with limpa by ATpoint ★ 5.0k

Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …

Comment: chemmineOB install help by Jeremy • 0

I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…

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A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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