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MNN
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reset
3
votes
6
replies
3.4k
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Carry over variable features when converting FastMNN SCE object to Seurat object
mnn
batchelor
scrna-seq
seurat
updated 4.5 years ago by
Aaron Lun
★ 28k • written 4.5 years ago by
heir_of_isildur88
• 0
2
votes
1
reply
2.3k
views
Batch Corrections (MNN) with TPM values
scRNA-Seq
scater
scran
rna-seq
MNN
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
hamza_karakurt
▴ 60
2
votes
2
replies
1.9k
views
Subclustering after MNN batch-correction
batchelor
mnn
scrna-seq
updated 2.3 years ago by
Guandong Shang
▴ 40 • written 4.8 years ago by
heir_of_isildur88
• 0
0
votes
2
replies
1.1k
views
Help with the output from mnnCorrect
mnnCorect
MNN
5.1 years ago
sharvari gujja
▴ 40
4 results • Page
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Replies
Comment: Volcano plot has many values around zero
by
Michael Love
42k
It's positive over zero or nearly so.
Answer: Volcano plot has many values around zero
by
swbarnes2
★ 1.4k
You've got genes with supposedly have a 32-fold difference, and the adjusted p-values are < 1x10-10? That seems odd.
Comment: Volcano plot has many values around zero
by
mjun
• 0
Why this cluster close to 0 with low p value is so distinctive. Is this common? What does it mean and why? Thanks
Comment: Volcano plot has many values around zero
by
swbarnes2
★ 1.4k
I don't think this is evidence that the dataset is invalid. It's evidence that your experiment is underpowered, and/or your experimental c…
Comment: Differential Expression Analysis with unbalanced batches without replication bet
by
Gordon Smyth
51k
Have you read the totalVI documentation?, which says: > **Important** > We do not recommend using totalVI denoised values in other differ…
Votes
Comment: Weird looking volcano plot
Volcano plot has many values around zero
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
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Dario Strbenac
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Gordon Smyth
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shepherl
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