Bioconductor Minfi

Showing : Minfi • reset

2

votes

6

replies

1.4k

views

ChAMP DMRcate minfi

updated 29 days ago by Tim Peters ▴ 170 • written 5 months ago by rae.alshammari ▴ 10

0

votes

4

replies

237

views

min minfi

updated 3 days ago by James W. MacDonald 65k • written 4 weeks ago by clacarion • 0

1

vote

4

replies

192

views

minfiData minfi

updated 8 days ago by Basti ▴ 780 • written 9 days ago by clacarion • 0

3 results • Page 1 of 1

Recent ...

Replies

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …

Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…

Comment: Differences in differential analysis methods for RNA-Seq by james.zhang20 • 0

Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…

Answer: Deseq2 and Normalization of RNA sequencing data by ATpoint ★ 4.1k

There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …

Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…

Votes

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

SPIA plotP giving error

Awards • All

Popular Question to rohitsatyam102 ▴ 20