Showing : MotifbreakR • reset
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motifbreakR VariantAnnotation namespace error on reading vcf file
motifbreakR variantannotation
updated 10.3 years ago by ▴ 50 • written 10.3 years ago by ▴ 20
2
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5
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3.4k
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Error with R package motifbreakR while trying to read a vcf file with snps.from.file function
motifbreakR vcf snps motif analysis
updated 7.6 years ago by ★ 6.8k • written 7.6 years ago by ▴ 840
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2
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868
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Is there a function that takes an amino acid string and returns all biologically possible substitutions?
Biostrings aminoacid motifbreakR
written 17 months ago by • 0
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1.3k
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Motif Breaker error
bioconductor motifbreakr plotmb
8.2 years ago priyankaraina10 • 0
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1.4k
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How are the MotifbreakR scores calculated, and how do they relate to one another?
MotifbreakR R motifs
6.8 years ago camerond • 0
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1.5k
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motifBreakR error with custom BSgenome
GenomeInfoDb motifbreakR
4.8 years ago Chris Seidel ▴ 80
6 results • Page 1 of 1
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Comment: DiffBind plot.profile error by a2sahaaaq2c • 0
To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…
Comment: soGGi error by shepherl 4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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