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motifbreakr
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Is there a function that takes an amino acid string and returns all biologically possible substitutions?
Biostrings
aminoacid
motifbreakR
written 3 months ago by
wilson_ava
• 0
0
votes
0
replies
1.1k
views
motifBreakR error with custom BSgenome
GenomeInfoDb
motifbreakR
3.6 years ago
Chris Seidel
▴ 80
0
votes
0
replies
1.0k
views
How are the MotifbreakR scores calculated, and how do they relate to one another?
MotifbreakR
R
motifs
5.6 years ago
camerond
• 0
2
votes
5
replies
2.8k
views
Error with R package motifbreakR while trying to read a vcf file with snps.from.file function
motifbreakR
vcf
snps
motif analysis
updated 6.5 years ago by
Valerie Obenchain
★ 6.8k • written 6.5 years ago by
svlachavas
▴ 840
0
votes
0
replies
1.0k
views
Motif Breaker error
bioconductor
motifbreakr
plotmb
7.0 years ago
priyankaraina10
• 0
0
votes
2
replies
1.4k
views
motifbreakR VariantAnnotation namespace error on reading vcf file
motifbreakR
variantannotation
updated 9.1 years ago by
Simon Coetzee
▴ 50 • written 9.1 years ago by
ashley.doane
▴ 20
6 results • Page
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Comment: pathview - multiple states
by
Philippine
• 0
:D Thank you!!! It works perfectly.
Answer: lfcShrink and alpha value
by
Michael Love
43k
The code I sent just tells summary what threshold to use when printing the table.
Comment: Crossover design with limma
by
Marek Gierlinski
▴ 30
Thank you for your answer. It is an interesting solution. I've never though of modifying the design matrix itself - I always try to have a …
Comment: pathview - multiple states
by
Guido Hooiveld
★ 4.1k
According to the the help page of `pathview` (type `?pathview`) the input should be `either vector (single sample) or a matrix-like data (m…
Comment: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
by
Aaron Lun
★ 28k
You can examine the structure of a `DelayedMatrix` by calling the `showtree()` function. For example: ``` library(scRNAseq) X <- fetchData…
Votes
scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
Comment: pathview - multiple states
Answer: Crossover design with limma
Answer: Crossover design with limma
Answer: Different PCA results when using rlog and vst transformations
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