Bioconductor Multifactorial

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DESeq2 multifactorial nested

updated 2.8 years ago by Basti ▴ 780 • written 2.8 years ago by jd • 0

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DESeq2 LRT multifactorial up/down-reg log2FC

updated 3.1 years ago by James W. MacDonald 68k • written 3.1 years ago by Laia ▴ 10

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DESeq2 time-series timecoursedata timecourse multifactorial

updated 3.1 years ago by Michael Love 43k • written 3.2 years ago by arshad1292 • 0

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Interactions design Multifactorial DESeq2

updated 4.2 years ago by swbarnes2 ★ 1.4k • written 4.2 years ago by Marie • 0

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Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Martin Morgan 25k

I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by ATpoint ★ 5.0k

Yes, still it's not reproducible, yet hard to debug. I cannot reproduce myself either.

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0

Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…

Answer: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0

Still happening in a clean install

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A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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