Bioconductor MultipleComparison

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679

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limmaGUI lim MultipleComparison multip

updated 20 months ago by Gordon Smyth 53k • written 20 months ago by roger.moreno.justicia • 0

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1.1k

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Linnorm DEG MultipleComparison

updated 2.0 years ago by shunyip • 0 • written 4.2 years ago by awakumaya • 0

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1.5k

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Proteomics proDA MultipleComparison

2.1 years ago t.b.n.nguyen-9 • 0

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1.6k

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MultipleComparison DESeq2 Genetics contrasts RNASeq

updated 2.3 years ago by James W. MacDonald 68k • written 2.3 years ago by a26fd14e • 0

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1.1k

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DESeq2 MultipleComparison r

updated 2.9 years ago by Michael Love 43k • written 2.9 years ago by ncorak • 0

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812

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MultipleComparison DESeq2

updated 3.5 years ago by Michael Love 43k • written 3.5 years ago by Joshua • 0

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3.2k

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MultipleComparison edgeR DESeq2

written 3.6 years ago by yuet • 0

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1.1k

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factor DESeq2 MultipleComparison

updated 3.9 years ago by swbarnes2 ★ 1.4k • written 3.9 years ago by diegocastano182 • 0

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1.4k

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GeneExpression R limma MultipleComparison

updated 4.9 years ago by James W. MacDonald 68k • written 4.9 years ago by Gwénolé • 0

9 results • Page 1 of 1

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Comment: DESeq2 for candidate gene analysis by horrible.junglefowl.xkxi • 0

The free online calculator has become an indispensable tool in our digital world. Its versatility, accessibility, and ease of use make it a…

Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 10

thank you so much for answering Dr. Love!

Answer: DESeq2 for candidate gene analysis by Michael Love 43k

Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…

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Answer: DESeq2 for candidate gene analysis

DESeq2 for candidate gene analysis

Join BOC Sciences at Drug Discovery Chemistry

Drug datasets for RNA-seq

Comment: Check removeBatchEffect effectiveness

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