Bioconductor MultipleComparison

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410

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limmaGUI lim MultipleComparison multip

updated 8 months ago by Gordon Smyth 51k • written 8 months ago by roger.moreno.justicia • 0

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862

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Linnorm DEG MultipleComparison

updated 13 months ago by shunyip • 0 • written 3.3 years ago by awakumaya • 0

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1.0k

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Proteomics proDA MultipleComparison

14 months ago t.b.n.nguyen-9 • 0

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1.0k

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MultipleComparison DESeq2 Genetics contrasts RNASeq

updated 16 months ago by James W. MacDonald 67k • written 16 months ago by a26fd14e • 0

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830

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DESeq2 MultipleComparison r

updated 23 months ago by Michael Love 42k • written 23 months ago by ncorak • 0

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657

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MultipleComparison DESeq2

updated 2.5 years ago by Michael Love 42k • written 2.5 years ago by Joshua • 0

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2.6k

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MultipleComparison edgeR DESeq2

written 2.6 years ago by yuet • 0

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834

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factor DESeq2 MultipleComparison

updated 3.0 years ago by swbarnes2 ★ 1.4k • written 3.0 years ago by diegocastano182 • 0

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1.1k

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GeneExpression R limma MultipleComparison

updated 3.9 years ago by James W. MacDonald 67k • written 3.9 years ago by Gwénolé • 0

9 results • Page 1 of 1

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Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k