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Main effect on multiple comparisons in limma
limmaGUI lim MultipleComparison multip
updated 13 months ago by 52k • written 13 months ago by • 0
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Multiple groups comparison using Linnorm
Linnorm DEG MultipleComparison
updated 17 months ago by • 0 • written 3.7 years ago by • 0
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How to find differentially expressed proteins from multiple conditions (>2) using proDA?
Proteomics proDA MultipleComparison
19 months ago • updated 18 months ago t.b.n.nguyen-9 • 0
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Multiple Testing When Using Multiple Contrasts/Comparisons in DESEQ2
MultipleComparison DESeq2 Genetics contrasts RNASeq
updated 20 months ago by 68k • written 20 months ago by • 0
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Correction for multiple comparison by DeSeq2 - treatment1 vs. control, treatment2 vs. control, ... treatment n vs. control
DESeq2 MultipleComparison r
updated 2.3 years ago by 43k • written 2.3 years ago by • 0
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DESeq2 Multiple Pairwise Comparisons with Odd Set-up
MultipleComparison DESeq2
updated 2.9 years ago by 43k • written 2.9 years ago by • 0
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How to reduce the impact of one varaible in Deseq2 or edgeR for multivariate value analysis?
MultipleComparison edgeR DESeq2
written 3.0 years ago by • 0
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DESeq2: Difference between two groups of conditions
factor DESeq2 MultipleComparison
updated 3.3 years ago by ★ 1.4k • written 3.3 years ago by • 0
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3
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Troubles implementing LIMMA for paired samples (before/after treatment) comparaisons
GeneExpression R limma MultipleComparison
updated 4.3 years ago by 68k • written 4.3 years ago by • 0
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Answer: best way to grouping GSM belonging to different datasets (with different platfor by James W. MacDonald 68k
The only defensible way is to make comparisons within experiments and then do a meta-analysis. But that assumes you have identified multipl…
Comment: DESeq2 estimateSizeFactors with control genes by sofia.rigou • 0
I am also trying to use this function to estimate sizefactor based on RT-dPCR data but estimateSizeFactor only takes integers. Should I mul…
Comment: DiffBind custom normalization factor by Abbie • 0
Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k
All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…
Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0
Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…
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clusterProfiler-GO enrichment Error
A: Machine learning in R book
Data preparation and Machine learning on time course RNAseq data
Data preparation and Machine learning on time course RNAseq data
Answer: Use of org.Rn.eg.db with GRCr8 reference genome
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