Bioconductor MultipleComparison

Showing : MultipleComparison • reset

votes

630

views

limmaGUI lim MultipleComparison multip

updated 18 months ago by Gordon Smyth 52k • written 18 months ago by roger.moreno.justicia • 0

votes

1.0k

views

Linnorm DEG MultipleComparison

updated 22 months ago by shunyip • 0 • written 4.1 years ago by awakumaya • 0

vote

replies

1.5k

views

Proteomics proDA MultipleComparison

2.0 years ago t.b.n.nguyen-9 • 0

votes

replies

1.5k

views

MultipleComparison DESeq2 Genetics contrasts RNASeq

updated 2.1 years ago by James W. MacDonald 68k • written 2.2 years ago by a26fd14e • 0

votes

1.1k

views

DESeq2 MultipleComparison r

updated 2.7 years ago by Michael Love 43k • written 2.7 years ago by ncorak • 0

vote

790

views

MultipleComparison DESeq2

updated 3.3 years ago by Michael Love 43k • written 3.3 years ago by Joshua • 0

votes

replies

3.1k

views

MultipleComparison edgeR DESeq2

written 3.4 years ago by yuet • 0

votes

1.1k

views

factor DESeq2 MultipleComparison

updated 3.8 years ago by swbarnes2 ★ 1.4k • written 3.8 years ago by diegocastano182 • 0

vote

replies

1.4k

views

GeneExpression R limma MultipleComparison

updated 4.7 years ago by James W. MacDonald 68k • written 4.7 years ago by Gwénolé • 0

9 results • Page 1 of 1

Recent ...

Replies

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …

Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel by James W. MacDonald 68k

Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…

Votes

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Can NanoString data be analyzed using DESeq2?

Awards • All

Popular Question to Robert Castelo ★ 3.4k