Showing : MultipleComparison • reset
0
votes
1
reply
246
views
Main effect on multiple comparisons in limma
limmaGUI lim MultipleComparison multip
updated 3 months ago by 51k • written 4 months ago by • 0
0
votes
1
reply
717
views
Multiple groups comparison using Linnorm
Linnorm DEG MultipleComparison
updated 8 months ago by • 0 • written 2.9 years ago by • 0
1
vote
4
replies
809
views
How to find differentially expressed proteins from multiple conditions (>2) using proDA?
Proteomics proDA MultipleComparison
9 months ago t.b.n.nguyen-9 • 0
0
votes
3
replies
736
views
Multiple Testing When Using Multiple Contrasts/Comparisons in DESEQ2
MultipleComparison DESeq2 Genetics contrasts RNASeq
updated 11 months ago by 66k • written 11 months ago by • 0
0
votes
1
reply
690
views
Correction for multiple comparison by DeSeq2 - treatment1 vs. control, treatment2 vs. control, ... treatment n vs. control
DESeq2 MultipleComparison r
updated 18 months ago by 42k • written 18 months ago by • 0
1
vote
1
reply
570
views
DESeq2 Multiple Pairwise Comparisons with Odd Set-up
MultipleComparison DESeq2
updated 2.1 years ago by 42k • written 2.1 years ago by • 0
2
votes
17
replies
2.3k
views
How to reduce the impact of one varaible in Deseq2 or edgeR for multivariate value analysis?
MultipleComparison edgeR DESeq2
written 2.2 years ago by • 0
0
votes
1
reply
696
views
DESeq2: Difference between two groups of conditions
factor DESeq2 MultipleComparison
updated 2.6 years ago by ★ 1.4k • written 2.6 years ago by • 0
1
vote
3
replies
998
views
Troubles implementing LIMMA for paired samples (before/after treatment) comparaisons
GeneExpression R limma MultipleComparison
updated 3.5 years ago by 66k • written 3.5 years ago by • 0
9 results • Page 1 of 1
Recent ...
Replies
Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
Answer: Design formula, numeric contrast, and lfcshrink in deseq2 by Michael Love 42k
For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…
Votes
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
Awards • All
Popular Question to swbarnes2 ★ 1.4k
Popular Question to Stephanie M. Gogarten ▴ 870
Popular Question to Jonathan ▴ 10
Popular Question to Frederico Moraes Ferreira ▴ 100
Popular Question to richardallenfriedmanbrooklyn ▴ 20
Locations • All
San Diego, 54 minutes ago
WEHI, Melbourne, Australia, 1 hour ago
Canada, 2 hours ago
The city by the bay, 4 hours ago
United States, 4 hours ago
Traffic: 372 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6