Biostar NCBI GEO

Showing : NCBI GEO • reset

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3.0k

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geoquery ncbi geo geo data

5.8 years ago fongchunchan ▴ 30

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785

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limma microarray bioconductor ncbi geo

updated 5.6 years ago by Gordon Smyth 46k • written 5.6 years ago by kevin.m.hao ▴ 10

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933

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frma barcode geneexpression gsm ncbi geo

updated 4.7 years ago by Matthew McCall ▴ 830 • written 4.7 years ago by diana.elassal • 0

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1.9k

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NCBI GEO

updated 21 months ago by SAn • 0 • written 6.5 years ago by maedakus ▴ 10

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606

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limma differential gene expression ncbi geo affymetrix microarrays

updated 3.8 years ago by Aaron Lun ★ 27k • written 3.8 years ago by Francesca McGrath • 0

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671

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geoquery ncbi geo biobase

3.7 years ago cschot3 • 0

6 results • Page 1 of 1

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Comment: error running UniProt.ws by James W. MacDonald 60k

Or maybe it is a quick fix! Nicely done Marcel!

Answer: Error with TCGA package - TCGAbiolinks by Tiago C. Silva ▴ 220

It is working with the github version. Could you update please? BiocManager::install("BioinformaticsFMRP/TCGAbiolinksGUI.data") …

Comment: Error with TCGA package - TCGAbiolinks by Marcel Ramos 570

You can try the Genomic Data Commons Data Portal at [https://portal.gdc.cancer.gov/][1] or the `GenomicDataCommons` R/Bioconductor packag…

Answer: error running UniProt.ws by Marcel Ramos 570

I've updated the package to handle these requests on both Bioc devel and release 3.15. Let me know if you have any issues. Best, M…

Comment: I want to know how to analyze TCGA data with maftools. by Marcel Ramos 570

You would have to get the appropriate data from a service such as the Genomic Data Commons Data Portal. [https://portal.gdc.cancer.gov/][1…

Votes

On empirical Bayes of edgeR

Answer: CQN to DESeq2

Comment: package 'BiocInstaller' is not available (for R version 3.4.4)

Answer: Extract specific portion of a string and paste to a new column in R

Answer: lapply for GRanges

Awards • All

Centurion to Marcel Ramos 570

Scholar to Gordon Smyth 46k