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OSCA
•
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2
votes
2
replies
459
views
How to read OSCA book?
BIOCON
OSCA
Bioconductor
5 months ago
zr
• 0
0
votes
2
replies
1.4k
views
how to plot a fitting line on the testPseudotime
Pseudotime
testPseudotime
TSCAN
SingleCell
OSCA
2.4 years ago
Guandong Shang
▴ 40
3
votes
2
replies
2.2k
views
FeaturePlot in scater
scater
OSCA
2.6 years ago
Guandong Shang
▴ 40
2
votes
1
reply
975
views
() followed by [] within an argument in singlecell OSCA workflow
SingleCell
R
OSCA
updated 2.8 years ago by
jeroen.gilis
▴ 90 • written 2.8 years ago by
BioInfoBeginnerrr
• 0
3
votes
3
replies
3.1k
views
Cell cycle regression for scRNA-seq data
OSCA
batchelor
cell cycle regression
updated 4.5 years ago by
Aaron Lun
★ 28k • written 4.5 years ago by
ATpoint
★ 4.7k
5 results • Page
1 of 1
Recent ...
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Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `ntd()` or `vst/…
Answer: Weird p-values using DESeq2?
by
Wolfgang Huber
★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Comment: How to visualize these pathways using pathview
by
ingrid.h
• 0
Yes I have seen it, thanks.
Comment: Store Matrix in DataFrame Cell
by
Dario Strbenac
★ 1.6k
It does not appear to work. > DataFrame(name = "test", value = list(matrix(1:4, ncol = 2))) DataFrame with 2 rows and 3 columns …
Comment: Overcoming confounding in batch effect correction
by
Dario Strbenac
★ 1.6k
Actually, it is directly related. ComBat-seq is a part of [sva][1] package. It should use sva tag. [1]: https://bioconductor.org/package…
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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