Showing : PROcess • reset
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SNP array packages
SNP Microarray PROcess SNP Microarray PROcess
updated 19.9 years ago by ▴ 290 • written 19.9 years ago by ▴ 20
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goCluster results
Annotation PROcess goCluster Annotation PROcess goCluster
19.9 years ago kfbargad@ehu.es ▴ 270
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AnnBuilder subscript out of bounds error
Microarray Genetics Annotation GO probe AnnBuilder PROcess Microarray Genetics Annotation
updated 19.9 years ago by ▴ 780 • written 19.9 years ago by ▴ 20
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Issues with BioC GO annotations and NetAffx
Annotation GO probe affy PROcess GOstats Category Annotation GO probe affy PROcess
updated 19.9 years ago by ★ 7.4k • written 19.9 years ago by ▴ 110
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BioC annotations for mgug4122a
Annotation PROcess Annotation PROcess
updated 19.9 years ago by ▴ 780 • written 19.9 years ago by ▴ 20
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817
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[Fwd: BioC annotations for mgug4122a]
Annotation PROcess Annotation PROcess
updated 19.9 years ago by ★ 2.9k • written 19.9 years ago by ★ 1.3k
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Quick start to linking GO terms and microarray data
Microarray GO affy PROcess goTools GOstats Microarray GO affy PROcess goTools GOstats
19.9 years ago michael watson IAH-C ★ 3.4k
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normalization of duplicate spots
Normalization vsn limma PROcess Normalization vsn limma PROcess
20.0 years ago Jianping Jin ▴ 890
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exprSets from SMD data
PROcess PROcess
20.0 years ago Jeff Gentry ★ 3.9k
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1.4k
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RNA degradation problem
Normalization affy limma affyPLM PROcess Normalization affy limma affyPLM PROcess
updated 20.1 years ago by ▴ 810 • written 20.1 years ago by ▴ 940
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MixtureCDF
Cancer hgu133a2 hgu133a cdf PROcess Cancer hgu133a2 hgu133a cdf PROcess
20.1 years ago Jack Zhu ▴ 30
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694
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normexp (limma) failure?
affy limma PROcess affy limma PROcess
20.2 years ago Gordon Smyth 53k
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1.7k
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Again on heatmap clusters - dChip style, Pearson's distance. Which solutions ?
Clustering PROcess Clustering PROcess
updated 20.2 years ago by ★ 1.8k • written 20.2 years ago by ▴ 540
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averaging replicates within arrays
Microarray Normalization limma PROcess Microarray Normalization limma PROcess
updated 20.3 years ago by ★ 6.0k • written 20.3 years ago by ▴ 310
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averaging replicates within arrays
Normalization limma PROcess Normalization limma PROcess
20.3 years ago Gordon Smyth 53k
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3.2k
views
Rgraphviz load problem
Rgraphviz PROcess Rgraphviz PROcess
updated 20.3 years ago by ★ 7.4k • written 20.3 years ago by ★ 3.9k
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letters of support
Cancer PROcess Cancer PROcess
20.4 years ago rgentleman ★ 5.5k
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Design and normalization of focused arrays
Normalization limma PROcess Normalization limma PROcess
20.4 years ago Gordon Smyth 53k
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1
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1.3k
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some experiences and some troubles with GraphAT package
GO graph PROcess GraphAT GO graph PROcess GraphAT
updated 20.4 years ago by ★ 7.4k • written 20.4 years ago by ▴ 70
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ABPkgBuilder Error; Again
Annotation GO Cancer Organism Biobase annotate AnnBuilder PROcess Annotation GO Cancer
20.5 years ago Barry Henderson ▴ 250
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4
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1.5k
views
ABPkgBuilder Error; Again: Solved
Annotation GO Cancer Organism Biobase annotate AnnBuilder PROcess Annotation GO Cancer
updated 20.5 years ago by ★ 7.4k • written 20.5 years ago by ▴ 250
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Job: Computational Biology Group at FHCRC is hiring
Infrastructure Cancer PROcess Infrastructure Cancer PROcess
20.5 years ago Seth Falcon ★ 7.4k
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1.2k
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making a cdf environment
cdf affy PROcess cdf affy PROcess
updated 20.6 years ago by 68k • written 20.6 years ago by ▴ 10
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982
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The package gcrma downloaded from Bioconductor cannot run in my linux machine
PROcess PROcess
20.6 years ago Qian Li ▴ 10
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1.1k
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NRC Postdoctoral Research Associateships at NIST
Microarray PROcess Microarray PROcess
20.6 years ago Marc Salit ▴ 80
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822
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ArrayQuest at MUSC
Microarray PROcess Microarray PROcess
20.7 years ago Gary Argraves ▴ 10
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2
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1.3k
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Ruuid requires specific MAKEFLAGS setting on Fedora Core 2
Ruuid Rgraphviz PROcess Ruuid Rgraphviz PROcess
updated 20.7 years ago by ▴ 80 • written 20.7 years ago by ▴ 70
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942
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Re: Use of RMA in increasingly-sized datasets
Normalization probe PROcess Normalization probe PROcess
updated 20.7 years ago by ▴ 60 • written 20.7 years ago by ▴ 50
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Use of RMA in increasingly-sized datasets
Cancer affy PROcess Cancer affy PROcess
updated 20.7 years ago by ▴ 230 • written 20.7 years ago by ▴ 110
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1.1k
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using nlme correlation structures in limma?
PROcess PROcess
updated 20.7 years ago by 53k • written 20.7 years ago by ▴ 320
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2.6k
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affycomp, *.CEL and *.CSV files
affycomp PROcess affycomp PROcess
20.7 years ago Mohammad Esad-Djou ▴ 520
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Golub's 1999 article CEL files
PROcess PROcess
20.8 years ago Eric Paquet ▴ 10
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1.6k
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Integrating Codelink data with bioconductor (using affy and limmafunctions)
Microarray Annotation Normalization affy limma PROcess codelink ASSIGN Microarray affy
updated 20.8 years ago by ▴ 760 • written 20.8 years ago by 53k
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Integrating Codelink data with bioconductor (using affy and limmafunctions)
Microarray Annotation Normalization affy limma PROcess codelink ASSIGN Microarray affy
20.8 years ago Diego Diez ▴ 760
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972
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Re: Rghraphviz
Rgraphviz PROcess Rgraphviz PROcess
20.8 years ago Seth Falcon ★ 7.4k
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999
views
probe alignment clustering
Annotation affy PROcess Annotation affy PROcess
updated 20.8 years ago by 21k • written 20.8 years ago by ▴ 80
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loged data or not loged previous to use normalize.quantile
Normalization limma PROcess Normalization limma PROcess
20.9 years ago Gordon Smyth 53k
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1.3k
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MAGE-ML reading
RMAGEML PROcess marray SJava RMAGEML PROcess marray SJava
updated 20.9 years ago by 21k • written 20.9 years ago by 6.7k
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rma on new samples
Classification probe Biobase affy PROcess Classification probe Biobase affy PROcess
20.9 years ago Kuhn, Max ▴ 70
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Re: [R] Installing GO 1.7.0
GO PROcess GO PROcess
20.9 years ago Seth Falcon ★ 7.4k
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639
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Question about Probes
probe PROcess probe PROcess
20.9 years ago hrishikesh deshmukh ▴ 420
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1.1k
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plier crashes with 51 CEL files
gcrma PROcess plier gcrma PROcess plier
20.9 years ago Adaikalavan Ramasamy ★ 1.8k
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asking for some code
PROcess PROcess
20.9 years ago zhihua li ▴ 120
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1
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987
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Installing R
GO GUI PROcess GO GUI PROcess
updated 21.0 years ago by ▴ 430 • written 21.0 years ago by ▴ 10
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4
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Anyone have a GO slim list for Affy HG-U133A or HG-U133Av2?
Annotation GO annotate affy PROcess Category cycle Annotation GO annotate affy PROcess
updated 21.0 years ago by ▴ 310 • written 21.0 years ago by ▴ 250
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1.9k
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Internationalization and localization of R
PROcess convert PROcess convert
21.0 years ago ripley@stats.ox.ac.uk ▴ 50
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1.0k
views
what linux version for Affy chip analysis
PROcess PROcess
updated 21.0 years ago by ▴ 180 • written 21.0 years ago by ▴ 320
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720
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memory problem
hgu133plus2 PROcess hgu133plus2 PROcess
updated 21.0 years ago by ★ 13k • written 21.0 years ago by ▴ 320
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1.2k
views
Installation memory demands (GO, humanLLMappings)
GO PROcess GO PROcess
updated 21.1 years ago by ▴ 50 • written 21.1 years ago by ▴ 70
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751
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Update on Bioconductor website changes
PROcess PROcess
21.1 years ago Seth Falcon ★ 7.4k
651 results • Page 11 of 14
Recent ...
Replies
Comment: The Call for Abstracts for BioC2026 is open! by antoniodaniels990 • 0
All submitters must register for an account on the OpenReview submission system at least two weeks prior to the abstract deadline. To avoid…
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
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Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
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