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PROcess
•
reset
0
votes
0
replies
1.2k
views
BIRD 2008 call for workshop proposal
PROcess
PROcess
18.6 years ago
Prof. Roland Wagner
▴ 100
0
votes
0
replies
1.1k
views
The above Feelgood Formula enshrines the common philosophy that the better you treat people, the better they will work.
Pathways
PROcess
BRAIN
Pathways
PROcess
BRAIN
18.6 years ago
Neddy
▴ 10
0
votes
1
reply
784
views
Using current GO data with Bioconductor
GO
PROcess
GO
PROcess
updated 18.6 years ago by
Marc Carlson
★ 7.2k • written 18.6 years ago by
peter robinson
▴ 300
0
votes
1
reply
1.2k
views
hgu133a and gnGNF1Ba
Microarray
Annotation
hgu133a
cdf
Biobase
affy
PROcess
Microarray
Annotation
hgu133a
cdf
updated 18.6 years ago by
Cei Abreu-Goodger
▴ 830 • written 18.6 years ago by
Robert Castelo
★ 3.4k
0
votes
0
replies
710
views
uk - What affiliate marketing company to use?
PROcess
PROcess
18.6 years ago
Charlie
▴ 10
0
votes
0
replies
1.6k
views
software for Affymetrix SNP arrays 6.0
SNP
affy
PROcess
SNP
affy
PROcess
18.6 years ago
Yu Chuan Tai
▴ 440
0
votes
1
reply
976
views
limma design
Microarray
GO
affy
limma
PROcess
Microarray
GO
affy
limma
PROcess
updated 18.6 years ago by
Lev Soinov
▴ 470 • written 18.6 years ago by
James W. MacDonald
68k
0
votes
3
replies
1.8k
views
Annotations dealing with "removed" refseq record
Annotation
mgug4122a
PROcess
Annotation
mgug4122a
PROcess
updated 18.7 years ago by
Nianhua Li
▴ 870 • written 18.7 years ago by
Francois Pepin
★ 1.3k
0
votes
5
replies
1.8k
views
from using biomaRt and r10kcod
r10kcod
probe
PROcess
convert
codelink
r10kcod
probe
PROcess
convert
codelink
updated 18.7 years ago by
Diego Diez
▴ 760 • written 18.7 years ago by
Weiwei Shi
★ 1.2k
0
votes
0
replies
1.0k
views
affy package: accessing the mas5 scale factors
affy
simpleaffy
PROcess
affy
simpleaffy
PROcess
18.7 years ago
Fenglong Liu
▴ 10
0
votes
1
reply
983
views
limma: fold-changes corrected for dye-effect
Microarray
limma
PROcess
Microarray
limma
PROcess
updated 18.8 years ago by
Naomi Altman
★ 6.0k • written 18.8 years ago by
karsten_hokamp@sfu.ca
▴ 10
0
votes
3
replies
1.8k
views
Annotation of U95av2 array
Microarray
Genetics
Annotation
GO
Cancer
hgu95av2
probe
affy
AnnBuilder
PROcess
Genetics
updated 18.8 years ago by
Nianhua Li
▴ 870 • written 18.8 years ago by
James W. MacDonald
68k
0
votes
1
reply
1.2k
views
RMA error on exon arrays
Normalization
Breast
cdf
probe
PROcess
Normalization
Breast
cdf
probe
PROcess
updated 18.8 years ago by
James W. MacDonald
68k • written 18.8 years ago by
raffaele calogero
▴ 500
0
votes
1
reply
1.2k
views
Problems in AnnBuilder package function ABPkgBuilder
Annotation
GO
rat2302
probe
Biobase
annotate
AnnBuilder
PROcess
Annotation
GO
rat2302
updated 18.8 years ago by
Nianhua Li
▴ 870 • written 18.8 years ago by
Asta Laiho
▴ 70
0
votes
3
replies
1.6k
views
annotations for Codelink arrays
Annotation
GO
Cancer
r10kcod
probe
AnnBuilder
PROcess
biomaRt
codelink
Annotation
GO
updated 18.8 years ago by
Diego Diez
▴ 760 • written 18.8 years ago by
Weiwei Shi
★ 1.2k
0
votes
3
replies
1.2k
views
probe expression profile to gene expression profile
probe
PROcess
probe
PROcess
updated 18.9 years ago by
Sean Davis
21k • written 18.9 years ago by
Weiwei Shi
★ 1.2k
0
votes
0
replies
921
views
hgu133plus2 normalization
Microarray
hgu133plus2
PROcess
Microarray
hgu133plus2
PROcess
18.9 years ago
Bin Zheng
▴ 10
0
votes
4
replies
1.4k
views
Memory error wihle processing 35 Affymetrix cel files
Cancer
PROcess
Cancer
PROcess
updated 18.9 years ago by
Gunther Höning
▴ 100 • written 18.9 years ago by
Seth Falcon
★ 7.4k
0
votes
2
replies
1.0k
views
justRMA and logarithm transformation
Microarray
PROcess
Microarray
PROcess
updated 18.9 years ago by
Ben Bolstad
★ 1.2k • written 18.9 years ago by
Alexander Richards
▴ 10
0
votes
0
replies
955
views
Normalizing non-normal array data (experimental sample vs. reference)
Normalization
PROcess
OLIN
Normalization
PROcess
OLIN
18.9 years ago
Oliver R. Homann
▴ 30
0
votes
1
reply
1.1k
views
Normalization in davidTiling demo
Normalization
GO
Survival
Biobase
genefilter
geneplotter
affy
vsn
PROcess
tilingArray
GO
updated 18.9 years ago by
Wolfgang Huber
★ 13k • written 18.9 years ago by
Julian Gehring
★ 1.3k
1
vote
0
replies
1.1k
views
GSEA with one class metaanalysis
PROcess
PROcess
18.9 years ago
Gordon Smyth
53k
0
votes
0
replies
950
views
GSEA for meta-analysis
PROcess
PROcess
18.9 years ago
Mark W Kimpel
▴ 830
0
votes
0
replies
890
views
GSEA with one class metaanalysis
PROcess
PROcess
18.9 years ago
Mark W Kimpel
▴ 830
0
votes
0
replies
1.8k
views
Illumina - Beadarray - Limma
Microarray
Normalization
limma
PROcess
lumi
Microarray
Normalization
limma
PROcess
lumi
18.9 years ago
Simon Lin
▴ 270
0
votes
0
replies
1.3k
views
question about the value retured by function ontoCompare()
GO
hgu133a
probe
PROcess
goTools
oligo
GO
hgu133a
probe
PROcess
goTools
oligo
19.0 years ago
Paquet, Agnes
▴ 500
0
votes
3
replies
1.3k
views
libraries or commands to help with parsing or handling web based database queries
PROcess
KEGGSOAP
PROcess
KEGGSOAP
updated 19.0 years ago by
Thomas Girke
★ 1.7k • written 19.0 years ago by
ALAN SMITH
▴ 40
0
votes
0
replies
1.0k
views
dChip v li.wong() (Was: Re: warnings from li wong summary method in expresso)
Microarray
Normalization
Preprocessing
Cancer
hgu133plus2
probe
affy
limma
PROcess
Cancer
19.0 years ago
Henrik Bengtsson
★ 2.4k
0
votes
0
replies
938
views
Bioconductor Digest, Vol 47, Issue 26
GO
cdf
probe
affy
gcrma
PROcess
convert
GO
cdf
probe
affy
gcrma
PROcess
convert
19.0 years ago
Manhong Dai
▴ 200
0
votes
1
reply
1.1k
views
AnnBuilder error: parseData can't access some tmp file
AnnBuilder
PROcess
biomaRt
AnnBuilder
PROcess
biomaRt
updated 19.1 years ago by
Nianhua Li
▴ 870 • written 19.1 years ago by
Benjamin Otto
▴ 830
0
votes
1
reply
1.2k
views
AffyRNAdeg: "degradation" or "digestion"?
affy
PROcess
affy
PROcess
updated 19.2 years ago by
rgentleman
★ 5.5k • written 19.2 years ago by
Gordon Smyth
53k
0
votes
0
replies
1.1k
views
Downloading data only once when building many annotation packages with AnnBuilder
Microarray
Annotation
annotate
limma
AnnBuilder
PROcess
Microarray
Annotation
annotate
19.3 years ago
David Weiss
▴ 10
0
votes
0
replies
1.7k
views
What to do with multiple probes in GSEA?
probe
affy
PROcess
probe
affy
PROcess
19.3 years ago
Dick Beyer
★ 1.4k
0
votes
1
reply
1.3k
views
Affymetrix exon arrays?
Normalization
Cancer
Breast
cdf
affy
PROcess
Normalization
Cancer
Breast
cdf
affy
updated 19.3 years ago by
Jesse Salisbury
▴ 20 • written 19.3 years ago by
Steven McKinney
▴ 310
0
votes
1
reply
756
views
creating platformdesign affy_250k nsp
PROcess
oligo
PROcess
oligo
updated 19.4 years ago by
James W. MacDonald
68k • written 19.4 years ago by
Roel Verhaak
▴ 70
0
votes
2
replies
2.4k
views
FW: Cannot restore saved data in .Rdata after loading tilingArray - object 'breakpoints' not found
Cancer
Breast
PROcess
tilingArray
snapCGH
Cancer
Breast
PROcess
tilingArray
snapCGH
updated 19.5 years ago by
Wolfgang Huber
★ 13k • written 19.5 years ago by
Steven McKinney
▴ 310
0
votes
2
replies
1.1k
views
Affymetrix exon arrays?
cdf
PROcess
cdf
PROcess
updated 19.5 years ago by
Henrik Bengtsson
★ 2.4k • written 19.5 years ago by
Jesse Salisbury
▴ 20
0
votes
2
replies
1.2k
views
Run GOHyperG on yeast without specifying a chip
Microarray
Yeast
PROcess
Microarray
Yeast
PROcess
updated 19.6 years ago by
James W. MacDonald
68k • written 19.6 years ago by
Maria Persico
▴ 100
0
votes
0
replies
987
views
vsn and microarray blank spots
Normalization
vsn
limma
PROcess
ASSIGN
Normalization
vsn
limma
PROcess
ASSIGN
19.6 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
903
views
vsn and microarray blank spots
Normalization
vsn
limma
PROcess
ASSIGN
Normalization
vsn
limma
PROcess
ASSIGN
19.6 years ago
Alessio Venier
▴ 40
0
votes
3
replies
2.9k
views
Problems loading biomaRt and XML
PROcess
biomaRt
PROcess
biomaRt
updated 19.6 years ago by
Seth Falcon
★ 7.4k • written 19.6 years ago by
Jordi Altirriba Gutiérrez
▴ 350
0
votes
0
replies
1.1k
views
Farms library
gcrma
PROcess
farms
gcrma
PROcess
farms
19.7 years ago
Phguardiol@aol.com
▴ 720
0
votes
0
replies
1.2k
views
FDA soliciting proposals to analyze gene expression datasets
Microarray
Pharmacogenomics
PROcess
Microarray
Pharmacogenomics
PROcess
19.8 years ago
Wolfgang Huber
★ 13k
0
votes
5
replies
1.7k
views
GCRMA Fold Change
probe
gcrma
PROcess
probe
gcrma
PROcess
updated 19.8 years ago by
Jenny Drnevich
★ 2.2k • written 19.8 years ago by
cap2018@columbia.edu
▴ 20
0
votes
1
reply
915
views
Limma; Background and Single Channel Analysis
limma
PROcess
limma
PROcess
updated 19.8 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 19.8 years ago by
Simone de Jong
▴ 10
0
votes
2
replies
1.9k
views
Removing probes before or after normalization
Annotation
Normalization
PROcess
Annotation
Normalization
PROcess
updated 19.8 years ago by
Jenny Drnevich
★ 2.2k • written 19.8 years ago by
Bornman, Daniel M
▴ 110
0
votes
3
replies
1.8k
views
internet2.dll equivalent for Mac
PROcess
PROcess
updated 19.9 years ago by
stefano iacus
▴ 430 • written 19.9 years ago by
Jonathan Arthur
▴ 70
0
votes
0
replies
1.6k
views
Problems using text to subset array information from anexpression set
Cancer
cdf
reposTools
affy
PROcess
Cancer
cdf
reposTools
affy
PROcess
19.9 years ago
Alvord, Greg DMS [Contr]
▴ 160
0
votes
4
replies
1.9k
views
Problems using text to subset array information from an expression set
cdf
reposTools
affy
PROcess
cdf
reposTools
affy
PROcess
updated 19.9 years ago by
Benilton Carvalho
★ 4.3k • written 19.9 years ago by
Jeff Lande
▴ 110
0
votes
1
reply
1.0k
views
internet2.dll equivalent for Mac
PROcess
PROcess
updated 19.9 years ago by
stefano iacus
▴ 430 • written 19.9 years ago by
Jonathan Arthur
▴ 70
651 results • Page
10 of 14
Recent ...
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Comment: using limma trend workflow in CAMERA
by
Gordon Smyth
53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results
by
Tikaaa2sahaaaq2c
• 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA
by
A.Barden
▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available
by
Tikaaa2sahaaaq2c
• 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Comment: Error message that there is no package called Biobase
by
DamionLedner99
• 0
thanks for sharing!!! https://cran.r-project.org/
Votes
Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
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43k
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James W. MacDonald
68k
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