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BIRD 2008 call for workshop proposal
PROcess PROcess
18.6 years ago Prof. Roland Wagner ▴ 100
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The above Feelgood Formula enshrines the common philosophy that the better you treat people, the better they will work.
Pathways PROcess BRAIN Pathways PROcess BRAIN
18.6 years ago Neddy ▴ 10
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Using current GO data with Bioconductor
GO PROcess GO PROcess
updated 18.6 years ago by ★ 7.2k • written 18.6 years ago by ▴ 300
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hgu133a and gnGNF1Ba
Microarray Annotation hgu133a cdf Biobase affy PROcess Microarray Annotation hgu133a cdf
updated 18.6 years ago by ▴ 830 • written 18.6 years ago by ★ 3.4k
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uk - What affiliate marketing company to use?
PROcess PROcess
18.6 years ago Charlie ▴ 10
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software for Affymetrix SNP arrays 6.0
SNP affy PROcess SNP affy PROcess
18.6 years ago Yu Chuan Tai ▴ 440
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976
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limma design
Microarray GO affy limma PROcess Microarray GO affy limma PROcess
updated 18.6 years ago by ▴ 470 • written 18.6 years ago by 68k
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Annotations dealing with "removed" refseq record
Annotation mgug4122a PROcess Annotation mgug4122a PROcess
updated 18.7 years ago by ▴ 870 • written 18.7 years ago by ★ 1.3k
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from using biomaRt and r10kcod
r10kcod probe PROcess convert codelink r10kcod probe PROcess convert codelink
updated 18.7 years ago by ▴ 760 • written 18.7 years ago by ★ 1.2k
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affy package: accessing the mas5 scale factors
affy simpleaffy PROcess affy simpleaffy PROcess
18.7 years ago Fenglong Liu ▴ 10
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1
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983
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limma: fold-changes corrected for dye-effect
Microarray limma PROcess Microarray limma PROcess
updated 18.8 years ago by ★ 6.0k • written 18.8 years ago by ▴ 10
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Annotation of U95av2 array
Microarray Genetics Annotation GO Cancer hgu95av2 probe affy AnnBuilder PROcess Genetics
updated 18.8 years ago by ▴ 870 • written 18.8 years ago by 68k
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RMA error on exon arrays
Normalization Breast cdf probe PROcess Normalization Breast cdf probe PROcess
updated 18.8 years ago by 68k • written 18.8 years ago by ▴ 500
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Problems in AnnBuilder package function ABPkgBuilder
Annotation GO rat2302 probe Biobase annotate AnnBuilder PROcess Annotation GO rat2302
updated 18.8 years ago by ▴ 870 • written 18.8 years ago by ▴ 70
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annotations for Codelink arrays
Annotation GO Cancer r10kcod probe AnnBuilder PROcess biomaRt codelink Annotation GO
updated 18.8 years ago by ▴ 760 • written 18.8 years ago by ★ 1.2k
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3
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1.2k
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probe expression profile to gene expression profile
probe PROcess probe PROcess
updated 18.9 years ago by 21k • written 18.9 years ago by ★ 1.2k
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hgu133plus2 normalization
Microarray hgu133plus2 PROcess Microarray hgu133plus2 PROcess
18.9 years ago Bin Zheng ▴ 10
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1.4k
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Memory error wihle processing 35 Affymetrix cel files
Cancer PROcess Cancer PROcess
updated 18.9 years ago by ▴ 100 • written 18.9 years ago by ★ 7.4k
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justRMA and logarithm transformation
Microarray PROcess Microarray PROcess
updated 18.9 years ago by ★ 1.2k • written 18.9 years ago by ▴ 10
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955
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Normalizing non-normal array data (experimental sample vs. reference)
Normalization PROcess OLIN Normalization PROcess OLIN
18.9 years ago Oliver R. Homann ▴ 30
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1
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1.1k
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Normalization in davidTiling demo
Normalization GO Survival Biobase genefilter geneplotter affy vsn PROcess tilingArray GO
updated 18.9 years ago by ★ 13k • written 18.9 years ago by ★ 1.3k
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1.1k
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GSEA with one class metaanalysis
PROcess PROcess
18.9 years ago Gordon Smyth 53k
0
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950
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GSEA for meta-analysis
PROcess PROcess
18.9 years ago Mark W Kimpel ▴ 830
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890
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GSEA with one class metaanalysis
PROcess PROcess
18.9 years ago Mark W Kimpel ▴ 830
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1.8k
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Illumina - Beadarray - Limma
Microarray Normalization limma PROcess lumi Microarray Normalization limma PROcess lumi
18.9 years ago Simon Lin ▴ 270
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question about the value retured by function ontoCompare()
GO hgu133a probe PROcess goTools oligo GO hgu133a probe PROcess goTools oligo
19.0 years ago Paquet, Agnes ▴ 500
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1.3k
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libraries or commands to help with parsing or handling web based database queries
PROcess KEGGSOAP PROcess KEGGSOAP
updated 19.0 years ago by ★ 1.7k • written 19.0 years ago by ▴ 40
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dChip v li.wong() (Was: Re: warnings from li wong summary method in expresso)
Microarray Normalization Preprocessing Cancer hgu133plus2 probe affy limma PROcess Cancer
19.0 years ago Henrik Bengtsson ★ 2.4k
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Bioconductor Digest, Vol 47, Issue 26
GO cdf probe affy gcrma PROcess convert GO cdf probe affy gcrma PROcess convert
19.0 years ago Manhong Dai ▴ 200
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1.1k
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AnnBuilder error: parseData can't access some tmp file
AnnBuilder PROcess biomaRt AnnBuilder PROcess biomaRt
updated 19.1 years ago by ▴ 870 • written 19.1 years ago by ▴ 830
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1.2k
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AffyRNAdeg: "degradation" or "digestion"?
affy PROcess affy PROcess
updated 19.2 years ago by ★ 5.5k • written 19.2 years ago by 53k
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1.1k
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Downloading data only once when building many annotation packages with AnnBuilder
Microarray Annotation annotate limma AnnBuilder PROcess Microarray Annotation annotate
19.3 years ago David Weiss ▴ 10
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1.7k
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What to do with multiple probes in GSEA?
probe affy PROcess probe affy PROcess
19.3 years ago Dick Beyer ★ 1.4k
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1.3k
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Affymetrix exon arrays?
Normalization Cancer Breast cdf affy PROcess Normalization Cancer Breast cdf affy
updated 19.3 years ago by ▴ 20 • written 19.3 years ago by ▴ 310
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creating platformdesign affy_250k nsp
PROcess oligo PROcess oligo
updated 19.4 years ago by 68k • written 19.4 years ago by ▴ 70
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2
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FW: Cannot restore saved data in .Rdata after loading tilingArray - object 'breakpoints' not found
Cancer Breast PROcess tilingArray snapCGH Cancer Breast PROcess tilingArray snapCGH
updated 19.5 years ago by ★ 13k • written 19.5 years ago by ▴ 310
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Affymetrix exon arrays?
cdf PROcess cdf PROcess
updated 19.5 years ago by ★ 2.4k • written 19.5 years ago by ▴ 20
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Run GOHyperG on yeast without specifying a chip
Microarray Yeast PROcess Microarray Yeast PROcess
updated 19.6 years ago by 68k • written 19.6 years ago by ▴ 100
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vsn and microarray blank spots
Normalization vsn limma PROcess ASSIGN Normalization vsn limma PROcess ASSIGN
19.6 years ago Wolfgang Huber ★ 13k
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vsn and microarray blank spots
Normalization vsn limma PROcess ASSIGN Normalization vsn limma PROcess ASSIGN
19.6 years ago Alessio Venier ▴ 40
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2.9k
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Problems loading biomaRt and XML
PROcess biomaRt PROcess biomaRt
updated 19.6 years ago by ★ 7.4k • written 19.6 years ago by ▴ 350
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Farms library
gcrma PROcess farms gcrma PROcess farms
19.7 years ago Phguardiol@aol.com ▴ 720
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1.2k
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FDA soliciting proposals to analyze gene expression datasets
Microarray Pharmacogenomics PROcess Microarray Pharmacogenomics PROcess
19.8 years ago Wolfgang Huber ★ 13k
0
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1.7k
views
GCRMA Fold Change
probe gcrma PROcess probe gcrma PROcess
updated 19.8 years ago by ★ 2.2k • written 19.8 years ago by ▴ 20
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1
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915
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Limma; Background and Single Channel Analysis
limma PROcess limma PROcess
updated 19.8 years ago by ★ 1.9k • written 19.8 years ago by ▴ 10
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2
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1.9k
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Removing probes before or after normalization
Annotation Normalization PROcess Annotation Normalization PROcess
updated 19.8 years ago by ★ 2.2k • written 19.8 years ago by ▴ 110
0
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3
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1.8k
views
internet2.dll equivalent for Mac
PROcess PROcess
updated 19.9 years ago by ▴ 430 • written 19.9 years ago by ▴ 70
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0
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1.6k
views
Problems using text to subset array information from anexpression set
Cancer cdf reposTools affy PROcess Cancer cdf reposTools affy PROcess
19.9 years ago Alvord, Greg DMS [Contr] ▴ 160
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4
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1.9k
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Problems using text to subset array information from an expression set
cdf reposTools affy PROcess cdf reposTools affy PROcess
updated 19.9 years ago by ★ 4.3k • written 19.9 years ago by ▴ 110
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1.0k
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internet2.dll equivalent for Mac
PROcess PROcess
updated 19.9 years ago by ▴ 430 • written 19.9 years ago by ▴ 70
651 results • Page 10 of 14
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Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Comment: Error message that there is no package called Biobase by DamionLedner99 • 0
thanks for sharing!!! https://cran.r-project.org/
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Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
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