Showing : PROcess • reset
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Upcoming changes to the Bioconductor website
PROcess PROcess
21.1 years ago Seth Falcon ★ 7.4k
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1.9k
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A question about Limma
PROcess Microarray limma
21.1 years ago • updated 2.7 years ago Gordon Smyth 53k
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Re: [R] Configuration of memory usage
PROcess PROcess
updated 21.1 years ago by ▴ 20 • written 21.1 years ago by ▴ 70
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Configuration of memory usage
PROcess trigger PROcess trigger
updated 21.1 years ago by ▴ 20 • written 21.1 years ago by ▴ 180
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916
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Beginner help
Microarray Cancer PROcess Microarray Cancer PROcess
21.1 years ago James W. MacDonald 68k
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Metrology for Gene Expression -- Postdoc Opportunities at NIST
Microarray PROcess GLAD attract Microarray PROcess GLAD attract
21.1 years ago Marc Salit ▴ 80
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Need better quality control for reliable installation of bioconductor packages?
Cancer reposTools RdbiPgSQL PROcess twilight iSPlot Cancer reposTools RdbiPgSQL PROcess
updated 21.2 years ago by ★ 5.5k • written 21.2 years ago by 53k
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Need better quality control for reliable installation of bioconductor packages?
PROcess PROcess
21.2 years ago Glynn, Earl ▴ 170
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875
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failure trying to install GO
GO PROcess GO PROcess
21.2 years ago Jenny Bryan ▴ 110
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842
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question Binaries for Mac
GO PROcess GO PROcess
21.2 years ago Tiago R Magalhaes ▴ 60
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990
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question
Cancer PROcess Cancer PROcess
updated 21.2 years ago by ★ 5.5k • written 21.2 years ago by ▴ 10
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1.5k
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How can I get Heatmap using dChip clustering
Clustering PROcess Clustering PROcess
21.2 years ago Shi, Tao ▴ 720
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793
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digitized array images
PROcess PROcess
updated 21.2 years ago by 21k • written 21.2 years ago by ▴ 20
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1.4k
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OS X, Rgraphviz, bioconductor
graph Rgraphviz PROcess graph Rgraphviz PROcess
updated 21.3 years ago by ▴ 430 • written 21.3 years ago by ▴ 30
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701
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Combined U133A and B
PROcess PROcess
updated 21.3 years ago by 68k • written 21.3 years ago by 21k
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1.1k
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How to retrieve the GO identifier correctly?
GO PROcess GO PROcess
updated 21.3 years ago by ★ 5.5k • written 21.3 years ago by ▴ 50
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1.3k
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marrayLayout difficulties
PROcess marray PROcess marray
updated 21.4 years ago by ▴ 920 • written 21.4 years ago by ▴ 80
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740
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function pubmed and large requests
PROcess PROcess
21.4 years ago Kimpel, Mark W ▴ 890
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887
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Fw: Affy Bioconductor with Rat230_2 chips
Cancer affy simpleaffy PROcess Cancer affy simpleaffy PROcess
21.4 years ago Ali A. Pirani ▴ 10
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AnnBuilder/ABPkgBuilder: lots of Errors
Annotation GO Cancer Organism Biobase annotate AnnBuilder PROcess bridge Annotation GO
updated 21.4 years ago by ★ 2.9k • written 21.4 years ago by ▴ 90
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RE: quantile normalization
Normalization Cancer PROcess Normalization Cancer PROcess
updated 21.4 years ago by ▴ 30 • written 21.4 years ago by ▴ 70
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GCRMA fails with MOE430A Only
moe430a cdf probe gcrma PROcess moe430a cdf probe gcrma PROcess
updated 21.5 years ago by 68k • written 21.5 years ago by ▴ 340
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933
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AnnBuilder: sourceURLs not found error
AnnBuilder PROcess AnnBuilder PROcess
updated 21.5 years ago by ★ 2.9k • written 21.5 years ago by ▴ 160
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1.3k
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AnnBuilder links to unigene
GO Organism AnnBuilder PROcess GO Organism AnnBuilder PROcess
updated 21.5 years ago by ★ 2.9k • written 21.5 years ago by ▴ 160
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2.0k
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Labels in exprs to plot
Clustering affy PROcess Clustering affy PROcess
updated 21.5 years ago by 68k • written 21.5 years ago by ▴ 70
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3
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1.2k
views
Memory limitations with AffylmGUI
affy PROcess affy PROcess
updated 21.5 years ago by 68k • written 21.5 years ago by ▴ 20
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714
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64 Bit Itanium and the Affy Package
affy PROcess affy PROcess
21.6 years ago larsenmtl@comcast.net ▴ 30
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2x3 ANOVA
Microarray multtest gcrma factDesign PROcess Microarray multtest gcrma factDesign PROcess
21.6 years ago Jeff Lande ▴ 110
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1.2k
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FW: makecdfenv()
GO cdf PROcess altcdfenvs GO cdf PROcess altcdfenvs
21.6 years ago Lana Schaffer ▴ 80
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help
limma PROcess limma PROcess
updated 21.6 years ago by ▴ 1000 • written 21.6 years ago by ▴ 30
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900
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Questions related to processing large dataset in batches
Microarray Normalization Cancer hgu133plus2 probe affy gcrma PROcess Microarray Cancer
21.6 years ago James W. MacDonald 68k
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819
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Questions related to processing large dataset in batches
Normalization probe affy PROcess Normalization probe affy PROcess
21.6 years ago Li, Aiguo NIH/NCI ▴ 110
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1.5k
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win 64bit and general BioC computing power?
GO Clustering affy limma gcrma PROcess GO Clustering affy limma gcrma PROcess
updated 21.6 years ago by ▴ 360 • written 21.6 years ago by ▴ 940
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1.0k
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Help Regarding Analysis.
Microarray Normalization GO hu6800 rae230a probe affy PROcess Microarray Normalization
updated 21.7 years ago by 68k • written 21.7 years ago by ▴ 10
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1.4k
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median polish vs mas/PLIER info
Microarray Normalization Cancer probe affy GeneSpring PROcess plier Microarray Cancer
21.7 years ago Anthony Bosco ▴ 500
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1
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1.0k
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Affy Bioconductor with Rat230_2 chips
cdf simpleaffy PROcess cdf simpleaffy PROcess
updated 21.8 years ago by ★ 1.1k • written 21.8 years ago by ▴ 10
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791
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Published studies assessing process variability
affy PROcess affy PROcess
21.8 years ago Francois Collin ▴ 50
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2
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937
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CDF environment for U133_X3P
cdf PROcess cdf PROcess
updated 21.8 years ago by ★ 13k • written 21.8 years ago by ▴ 900
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1.6k
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Factorial design with LIMMA
limma PROcess limma PROcess
21.9 years ago cmprobst ▴ 60
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1.1k
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rma and SNOMAD
Normalization GO probe affy limma PROcess Normalization GO probe affy limma PROcess
21.9 years ago Lizhe Xu ▴ 210
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793
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Subsetting Affybatch Objects by Gene list.
GO probe PROcess GO probe PROcess
21.9 years ago Horswell, Stuart ▴ 30
0
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1
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1.5k
views
Warning message with dChip method
Annotation Normalization GO Cancer moe430a moe430b cdf affy limma gcrma annaffy PROcess
updated 21.9 years ago by ★ 2.3k • written 21.9 years ago by ▴ 210
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736
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Canine annotation package
Annotation affy PROcess Annotation affy PROcess
21.9 years ago LIANHE SHAO ▴ 50
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1
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1.3k
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questions about Affy package from new user
Proteomics Normalization GO Preprocessing Clustering probe affy PROcess mscalib GO probe
updated 21.9 years ago by 68k • written 21.9 years ago by ▴ 210
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1.2k
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LC-MS data
Proteomics Preprocessing Clustering PROcess Proteomics Preprocessing Clustering PROcess
21.9 years ago Nicholas Lewin-Koh ▴ 430
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1.2k
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Information about the next release (1.4)
Visualization Cancer PROcess Visualization Cancer PROcess
21.9 years ago A.J. Rossini ▴ 810
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2.9k
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limma design matrix
GO limma PROcess weaver GO limma PROcess weaver
21.9 years ago Gordon Smyth 53k
0
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1
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865
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limma package and related replicate genes problems
limma PROcess limma PROcess
updated 22.0 years ago by ▴ 1000 • written 22.0 years ago by ▴ 20
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2
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1.5k
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iterative gcrma on 92 slides?
Normalization mgu74av2 gcrma PROcess Normalization mgu74av2 gcrma PROcess
updated 22.0 years ago by ▴ 130 • written 22.0 years ago by ★ 1.4k
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4
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1.6k
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Another question Re: question on hgu95 metadata and ontoTools
GO probe affy graph ontoTools PROcess GO probe affy graph ontoTools PROcess
22.1 years ago Elisabetta Manduchi ▴ 160
651 results • Page 12 of 14
Recent ...
Replies
Comment: soGGi error by shepherl 4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
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Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
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