Bioconductor Proteome

Showing : Proteome • reset

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2.4k

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Genetics Normalization Proteome DESeq Genetics Normalization Proteome DESeq

updated 12.7 years ago by Davis McCarthy ▴ 20 • written 12.8 years ago by mali salmon ▴ 370

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768

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SequenceMatching Biostrings DifferentialExpression Proteome

updated 7 months ago by Hervé Pagès 16k • written 7 months ago by nromerov • 0

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1.6k

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Proteome Proteome

updated 16.7 years ago by Mª José Nueda ▴ 90 • written 16.8 years ago by simonegri@alice.it ▴ 20

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476

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Proteome ProtGenerics

written 19 months ago by bansalheena10 • 0

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MassSpectrometryData Proteome Database DEP

3.1 years ago tpm • 0

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807

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Proteome Proteome

14.6 years ago Tillinghast, Guy, M.D. ▴ 30

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1.1k

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Proteome ProteomicsWorkflow proteomics

updated 3.4 years ago by swbarnes2 ★ 1.3k • written 3.4 years ago by yueli7 ▴ 20

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198

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Proteomics ProteoMM ProteomicsWorkflow Proteome

written 5 months ago by ary.lech ▴ 10

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747

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shotgunproteomics Proteome proteomics Proteomics ProteoMM

2.1 years ago ary.lech ▴ 10

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560

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Proteomics Proteome

updated 19 months ago by ATpoint ★ 4.1k • written 19 months ago by bansalheena10 • 0

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1.5k

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ProteomicsWorkflow proteomics Proteome

3.4 years ago info ▴ 10

11 results • Page 1 of 1

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Answer: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k

This has been asked before, but with a multi factor design, the LFC for coefficient X adjust for the others, in a way that is often hard to…

Answer: Get genomic coordinates of CpGs sites (chromosomes, genomic position) by James W. MacDonald 65k

You don't say what array that is, so I will guess. ``` > library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19) > Locations DataFrame…

Answer: SGSeq: moving toward diffex from SGSeq analysis by Leonard Goldstein ▴ 200

`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…

Comment: Help with error using camera() in limma by Chris • 0

Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.

Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0

Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.

Votes

SPIA plotP giving error

Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

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