Showing : Proteome • reset
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analysis of overexpressed proteins in metaproteomes
Proteomics ProteoMM ProteomicsWorkflow Proteome
written 5 months ago by ▴ 10
2
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6
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772
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Biostrings error at retrieving protein sequences
SequenceMatching Biostrings DifferentialExpression Proteome
updated 7 months ago by 16k • written 7 months ago by • 0
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1
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480
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catagorization of proteins
Proteome ProtGenerics
written 19 months ago by • 0
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561
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Outliers
Proteomics Proteome
updated 19 months ago by ★ 4.1k • written 19 months ago by • 0
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751
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ProteoMM analysis with two replicates
shotgunproteomics Proteome proteomics Proteomics ProteoMM
2.1 years ago ary.lech ▴ 10
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7
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How can I convert the "Majority protein IDs" to "Gene names" (example below shown)?
MassSpectrometryData Proteome Database DEP
3.1 years ago tpm • 0
1
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1.5k
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News: Online training - Proteomics in R and Bioconductor
ProteomicsWorkflow proteomics Proteome
3.4 years ago info ▴ 10
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1.1k
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R package to change protein *.msf file to any readable file
Proteome ProteomicsWorkflow proteomics
updated 3.4 years ago by ★ 1.3k • written 3.4 years ago by ▴ 20
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5
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2.4k
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mRNA-seq cross-species analysis, is it possible?
Genetics Normalization Proteome DESeq Genetics Normalization Proteome DESeq
updated 12.8 years ago by ▴ 20 • written 12.8 years ago by ▴ 370
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BSgenome data package of the human proteome: Does it exist?
Proteome Proteome
14.6 years ago Tillinghast, Guy, M.D. ▴ 30
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2
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1.7k
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I: Two way anova or manova?
Proteome Proteome
updated 16.8 years ago by ▴ 90 • written 16.8 years ago by ▴ 20
11 results • Page 1 of 1
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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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