Bioconductor QuasR Error

Showing : QuasR Error • reset

votes

replies

1.0k

views

QuasR qQCReport QuasR error Error in .normarg_totalsize(totalsize)

5.4 years ago A.Singh • 0

vote

replies

1.7k

views

quasR quasr error alignmentparameters quasr

6.5 years ago Amer Ghalawinji • 0

vote

replies

1.8k

views

quasr quasr error

8.2 years ago jlncrnt ▴ 10

votes

replies

1.1k

views

quasr quasr error paired-end reads rnaseq

8.4 years ago guillaume.dachy • 0

votes

1.6k

views

quasr error

updated 9.2 years ago by Hotz, Hans-Rudolf ▴ 400 • written 9.2 years ago by ezgi_can00 • 0

vote

replies

1.6k

views

quasr error

9.3 years ago Paul Ríos • 0

votes

replies

1.8k

views

quasr error

updated 9.3 years ago by Martin Morgan 25k • written 9.3 years ago by maedakus ▴ 10

votes

replies

2.8k

views

quasr error

updated 9.3 years ago by Hotz, Hans-Rudolf ▴ 400 • written 9.3 years ago by tarek.mohamed ▴ 10

votes

replies

4.2k

views

QuasR Error

9.4 years ago tarek.mohamed ▴ 10

9 results • Page 1 of 1

Recent ...

Replies

Comment: Check removeBatchEffect effectiveness by Gordon Smyth 52k

Both of your matrices, `design_batcheffects` and `design_timepoint`, span the intercept term, which will cause a warning about NA coefficie…

Comment: DiffBind - question on the use of filtered or unfiltered input data by sloperun3az • 0

Your essay was beneficial to me, and I found it to be very useful. Thank you for writing it. You give a wealth of knowledge that is not onl…

Comment: compute_fasta_digest does not match Salmon index hash by sloperun3az • 0

The people who are reading your work are not taken into consideration, even though you appear to have a solid understanding of the subject …

Comment: parameters of filterByExpr by Paul Harrison ▴ 110

It might be worth trying limma-voom (or limma-trend) instead of a GLM based method. In our experience these are less prone to this problem.…

Comment: limma::voom vs edgeR::voomLmFit - when to use? by Gordon Smyth 52k

voomLmFit() is in edgeR instead of limma because it needs to call edgeR::glmFit() internally to determine which of the zero observations al…

Votes

Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

A: what should I do with many zero counts from Salmon quantification

Comment: parameters of filterByExpr

GAlignments Cigar to GRanges

Awards • All