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QuasR error
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QuasR qQCReport error
QuasR qQCReport
QuasR error
Error in .normarg_totalsize(totalsize)
4.3 years ago
A.Singh
• 0
1
vote
2
replies
1.3k
views
Error in checkForRemoteErrors(val) : QuasR: can't pass alignment parameters
quasR
quasr error
alignmentparameters
quasr
5.4 years ago
Amer Ghalawinji
• 0
1
vote
0
replies
1.6k
views
QuasR - preprocessReads fails with a SRFilterResult error
quasr
quasr error
7.2 years ago
jlncrnt
▴ 10
0
votes
0
replies
931
views
RNA Seq // QuasR : Error while extracting unmapped reads
quasr
quasr error
paired-end reads
rnaseq
7.3 years ago
guillaume.dachy
• 0
0
votes
1
reply
1.3k
views
Error: The specified genome ./data/BSgenome.Hsapiens.UCSC.hg19 does not have the extension of a fasta file (fa,fasta,fna)
quasr error
updated 8.2 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 8.2 years ago by
ezgi_can00
• 0
1
vote
2
replies
1.4k
views
QuasR error usign preprocessReads
quasr error
8.2 years ago
Paul Ríos
• 0
0
votes
5
replies
1.4k
views
package install error package is not available
quasr error
updated 8.2 years ago by
Martin Morgan
25k • written 8.2 years ago by
maedakus
▴ 10
2
votes
4
replies
2.3k
views
Question: qCount in QuasR for RNAseq quantification
quasr error
updated 8.3 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 8.3 years ago by
tarek.mohamed
▴ 10
0
votes
5
replies
3.5k
views
(QuasR Error) Error in checkForRemoteErrors(val) : one node produced an error: bowtie failed to perform the alignments
QuasR Error
8.3 years ago
tarek.mohamed
▴ 10
9 results • Page
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Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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