Showing : QuasR error • reset
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QuasR qQCReport error
QuasR qQCReport QuasR error Error in .normarg_totalsize(totalsize)
6.0 years ago A.Singh • 0
1
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Error in checkForRemoteErrors(val) : QuasR: can't pass alignment parameters
quasR quasr error alignmentparameters quasr
7.2 years ago Amer Ghalawinji • 0
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QuasR - preprocessReads fails with a SRFilterResult error
quasr quasr error
8.9 years ago jlncrnt ▴ 10
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RNA Seq // QuasR : Error while extracting unmapped reads
quasr quasr error paired-end reads rnaseq
9.0 years ago guillaume.dachy • 0
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Error: The specified genome ./data/BSgenome.Hsapiens.UCSC.hg19 does not have the extension of a fasta file (fa,fasta,fna)
quasr error
updated 9.9 years ago by ▴ 400 • written 9.9 years ago by • 0
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QuasR error usign preprocessReads
quasr error
10.0 years ago Paul Ríos • 0
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package install error package is not available
quasr error
updated 10.0 years ago by 25k • written 10.0 years ago by ▴ 10
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Question: qCount in QuasR for RNAseq quantification
quasr error
updated 10.0 years ago by ▴ 400 • written 10.0 years ago by ▴ 10
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(QuasR Error) Error in checkForRemoteErrors(val) : one node produced an error: bowtie failed to perform the alignments
QuasR Error
10.0 years ago tarek.mohamed ▴ 10
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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice by Gordon Smyth 53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
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Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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