Bioconductor RNASeq

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110

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DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq

updated 1 day ago by ATpoint ★ 4.1k • written 2 days ago by james.zhang20 • 0

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153

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limma RNASeq voom

written 11 days ago by taur.vil • 0

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1.7k

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sgseq rnaseq

updated 3 days ago by Leonard Goldstein ▴ 200 • written 6.7 years ago by Sylvain Foisy ▴ 80

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142

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DESeq2 RNAseq

updated 9 days ago by Michael Love 41k • written 9 days ago by kcarey • 0

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855

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clusterProfiler RNASeq

updated 10 days ago by Guangchuang Yu ★ 1.2k • written 14 months ago by ruiqi.li ▴ 10

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206

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technicalReplicates BatchEffect limma RNASeq

14 days ago • updated 12 days ago catv • 0

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166

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limma edgeR RNASeq

updated 15 days ago by Gordon Smyth 50k • written 16 days ago by Shaimaa Gamal • 0

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109

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DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 15 days ago by Michael Love 41k • written 16 days ago by 09191919 • 0

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911

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SingleCell RNASeq RNASeqData scRNAseq

updated 16 days ago by wichaidi • 0 • written 17 months ago by irvin.ng • 0

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137

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scRNAseq RNAseq

updated 23 days ago by ATpoint ★ 4.1k • written 25 days ago by Merav • 0

10 results • Page 1 of 1

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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

Votes

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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