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RTCGA
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RTCGA survival package Breast cancer subtypes
rtcga
5.9 years ago
giulia_m
▴ 10
6
votes
7
replies
2.6k
views
Differences between RTCGA and TCGAbiolinks data
r
survival analysis
rtcga
tcgabiolinks
mirna-seq
6.0 years ago
atakanekiz
▴ 30
2
votes
1
reply
1.7k
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error/warning message while doing kmTCGA survival plot
RTCGA
survival
kmTCGA
updated 7.1 years ago by
jpgsabino
▴ 10 • written 7.2 years ago by
colonppg
▴ 30
3 results • Page
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Comment: Deseq2
by
Ram
▴ 210
Cross-posted on biostars: https://www.biostars.org/p/9596031/
Comment: SpliceWiz collateData error
by
giulia.nicoletto.1
• 0
Hi there, I am facing a similar error. When I try the collateData command collateData( Experiment = expr, reference_path = "./Referen…
Answer: Best way to describe DEseq2 design
by
SamGG
▴ 350
Hi, My own opinion. In the design `~ Batch`, ChemicalA_t1 is the intercept. So, all coefficients refer to this level as a reference. …
Answer: Deseq2
by
ATpoint
★ 4.2k
Ser the vignette https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html It covers prefiltering (and everyt…
Comment: Counter-directional LFC shrinkage
by
Michael Love
42k
Gene 1 is hard to predict given the paucity of data for the comparison of interest. What is happening is that the relatively low dispersion…
Votes
Answer: Deseq2
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: When should I correct for batch effects
Answer: When should I correct for batch effects
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