Showing : survival • reset
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plots in gwasurvivr
gwasurvivr r survival cox
16 months ago laura.martinez.campelo • 0
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5
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372
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Issues installing DESeq2, installation path not writable, package: survival
deseq2 survival
updated 18 months ago by 35k • written 18 months ago by • 0
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215
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How to compute 95%CI after having C-index value?
survival nomogram cph 95CI
24 months ago huynguyen96.dnu ▴ 10
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229
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Estimating survival function with left truncation?
Icens Survival Left-truncation Interval-Censored
updated 2.4 years ago by 25k • written 2.4 years ago by • 0
3
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7
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2.0k
views
DESeq2 for survival analysis
deseq2 survival rlog transformation
4.1 years ago array chip ▴ 410
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685
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Need help determine optimal argument value on a rbsurv model
rbsurv microarray survival
4.2 years ago JackieMe • 0
2
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1
reply
883
views
error/warning message while doing kmTCGA survival plot
RTCGA survival kmTCGA
updated 4.7 years ago by ▴ 10 • written 4.8 years ago by ▴ 30
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536
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Error with Reportingtools using ENSEMBL gene ID
reporting tools modifyDF survival
5.6 years ago cagenet34 ▴ 20
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1
reply
951
views
simpleaffy segmentation fault
Survival probe genefilter affy affyio Survival probe genefilter affy affyio
updated 6.7 years ago by • 0 • written 15.0 years ago by ▴ 170
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1
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2.1k
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CanceR: Survival plots
cancer gui survival Kaplan-Meier
6.8 years ago • updated 6.7 years ago kmezhoud ▴ 10
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1
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1.0k
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[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression Survival snpStats Regression Survival snpStats
8.1 years ago David Winsemius ▴ 40
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2
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3.4k
views
Problem installing \'survival\' package/ Fix request + other options?
Survival Survival
updated 8.5 years ago by 58k • written 8.5 years ago by ★ 12k
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1
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1.1k
views
Fwd: feature weights in 'superpc' package
Survival ASSIGN Survival ASSIGN
updated 8.7 years ago by ★ 4.2k • written 8.7 years ago by ▴ 10
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10
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1.5k
views
assignChromosomeRegion in 2.6.0 ChIPpeakAnno
Microarray Annotation GO Network Regression Survival Infrastructure Escherichia coli ROC
8.8 years ago Julie Zhu ★ 4.3k
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2.5k
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ComBat
Transcription Genetics Pathways Network Survival Cancer Breast Colon Kidney Leukemia HIV
9.2 years ago SSc Array Core ▴ 10
0
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1
reply
2.9k
views
undefined columns selected error when using bagging{ipred}
Survival Survival
updated 9.4 years ago by ★ 6.7k • written 9.4 years ago by ★ 12k
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2
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1.2k
views
Kaplan Meier curve
Survival Survival
updated 9.6 years ago by ★ 2.0k • written 9.6 years ago by ▴ 200
0
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0
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1.7k
views
survival prediction from multiple genes
Survival Ovarian Survival Ovarian
9.9 years ago Ahmet ZEHIR ▴ 50
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0
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721
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MLInterfaces, CMA, or Caret for censored survival?
Survival Survival
10.0 years ago Levi Waldron ▴ 10
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600
views
globaltest 5.6.1 bug fix
Survival globaltest Survival globaltest
10.5 years ago Goeman, J.J. MSTAT ▴ 150
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1
reply
837
views
cox PH model - KM curve
Survival phenoTest Survival phenoTest
updated 10.5 years ago by ★ 2.0k • written 10.5 years ago by ▴ 330
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3
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1.3k
views
[Bioc-sig-seq] Bioconductor 2.8 is released
SNP Sequencing miRNA Microarray Annotation Normalization Pathways Preprocessing Survival
updated 10.8 years ago by ▴ 310 • written 10.8 years ago by ★ 8.2k
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0
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649
views
booklet on using R for biomedical statistics
Survival Survival
11.0 years ago Coghlan, Avril ▴ 190
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0
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648
views
globaltest 5.0.2
Survival globaltest Survival globaltest
12.0 years ago Goeman, J.J. MSTAT ▴ 150
0
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0
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651
views
2009 Courses***R/S-PLUS Advanced & Fundamentals - January 2009. Also check out our New&Emerging Courses.
Clustering Survival Clustering Survival
13.1 years ago sue@xlsolutions-corp.com ▴ 570
0
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1
reply
1.7k
views
forward conditional Cox and logistic regression
Genetics Regression Survival Genetics Regression Survival
updated 13.1 years ago by ★ 2.3k • written 13.1 years ago by ▴ 130
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2
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866
views
applying coxfilter after LIMMA
Survival Cancer limma Survival Cancer limma
updated 13.2 years ago by 58k • written 13.2 years ago by ▴ 330
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3
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1.4k
views
gene expression data followup
Survival Cancer Survival Cancer
updated 13.2 years ago by 58k • written 13.2 years ago by ▴ 330
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3
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1.1k
views
Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
13.2 years ago Patrick Aboyoun 1.6k
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0
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739
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affycoretools vennSelect problem
Annotation GO Survival probe annotate genefilter affy graph limma gcrma annaffy RBGL
13.6 years ago Nick Henriquez ▴ 20
0
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2
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738
views
affycoretools vennSelect problem
GO Survival annotate genefilter affy graph gcrma annaffy RBGL GOstats biomaRt affyio
updated 13.6 years ago by 58k • written 13.6 years ago by ▴ 30
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2
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922
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'Factorial Design' package question
Survival cdf multtest affy factDesign biomaRt Survival cdf multtest affy factDesign
13.6 years ago Glazko, Galina ▴ 350
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0
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1.6k
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Significance Analysis of Microarrays (SAM)
Survival Survival
13.7 years ago Eleni Christodoulou ▴ 150
0
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0
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805
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SECOND ANNOUNCEMENT: IV International Course on Microarray Data Analysis
Microarray Annotation Normalization GO Visualization Classification Clustering Survival GO
14.0 years ago Ana Conesa ▴ 340
0
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0
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714
views
Inf values using SAM (package=siggenes)
Annotation Survival Cancer genefilter affy limma maDB affyio Annotation Survival Cancer
14.0 years ago Holger Schwender ▴ 900
0
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0
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767
views
Inf values using SAM (package=siggenes)
Survival Cancer affy limma maDB affyio Survival Cancer affy limma maDB affyio
14.1 years ago Julian Lee ▴ 140
0
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0
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630
views
MTP error
GO Survival multtest affy affydata annaffy affyPLM affyio GO Survival multtest affy
14.2 years ago Boel Brynedal ▴ 200
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0
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929
views
FIRST ANNOUNCEMENT: IV International Course on Microarray Data Analysis
Microarray Annotation Normalization GO Visualization Classification Clustering Survival GO
14.2 years ago Ana Conesa ▴ 340
0
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1
reply
630
views
combining data from two R arrays
GO Survival annotate genefilter vsn tilingArray GO Survival annotate genefilter vsn
14.3 years ago Richard Harrison ▴ 70
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4
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812
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running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 14.3 years ago by ▴ 230 • written 14.3 years ago by ▴ 110
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2
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728
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 14.3 years ago by ▴ 40 • written 14.3 years ago by ▴ 110
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2
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680
views
vsm2
Survival geneplotter affy vsn limma affyio Survival geneplotter affy vsn limma affyio
updated 14.3 years ago by 13k • written 14.3 years ago by ▴ 70
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0
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691
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code for technical replicates in Limma with affy
Survival cdf annotate affy limma gcrma matchprobes affyio Survival cdf annotate affy
14.3 years ago Richard Friedman ★ 2.0k
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2
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761
views
problem with probes2tableBM
Annotation GO Survival hgu133a2 annotate genefilter affy graph gcrma matchprobes GOstats
updated 14.3 years ago by ▴ 500 • written 14.3 years ago by ▴ 510
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0
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631
views
problem with function to interrogate x:Map (exonmap)
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
14.4 years ago Wolfgang Raffelsberger ▴ 160
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7
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1.1k
views
problem with GOstats, developmental version?
GO Survival hgu95av2 annotate affy affydata graph Rgraphviz limma gcrma matchprobes GO
updated 14.4 years ago by ★ 7.4k • written 14.4 years ago by ★ 2.2k
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4
replies
847
views
problems rma() with mouse exon affy data in exonmap package
Survival cdf genefilter affy simpleaffy plier exonmap Survival cdf genefilter affy
updated 14.4 years ago by 58k • written 14.4 years ago by ▴ 20
0
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1
reply
685
views
Exonmap mapping problems
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
updated 14.4 years ago by ▴ 120 • written 14.4 years ago by ▴ 10
0
votes
6
replies
2.2k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
updated 14.4 years ago by ▴ 220 • written 14.4 years ago by ★ 2.2k
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0
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1.2k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
14.4 years ago Min Wook Kim ▴ 20
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Comment: Cannot install Phyloseq and dada2 by Guido Hooiveld ★ 3.2k
Did you notice this message:? Installation paths not writeable, unable to update packages path: C:/Program Files/R/R-4.0.0/libra…
Comment: Use of shrunken LFCs to address questions about the distribution of LFCs between by i.sudbery ▴ 20
Thanks Mike. I might have a play with stratifying by expression level. One reason I wasn't looking at gene set testing is that its the nul…
Answer: submitting a BSgenome package by deisianyufg • 0
From my Github repository. I am sorry, I thought the package was already released and realize now that is still only in my github reposito…
Comment: PlotPCA in DESeq2 doesn't produce exactly the same result as prcomp by swbarnes2 ▴ 970
Is the one plot a mirror image of the other?
Answer: Use of shrunken LFCs to address questions about the distribution of LFCs between by Michael Love 35k
hi Ian, Great question, and good to be concerned that the mean expression may be a confounder for either analysis, Why not stratify your…
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Answer: Use of shrunken LFCs to address questions about the distribution of LFCs between
Answer: DiffBind dba.count Error in if (sum(tokeep) < length(tokeep))
Comment: submitting a BSgenome package
Answer: rlog vs vst for outlier identification
Answer: DESeq2 median of ratios normalization for signature score calculation
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