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survival
•
reset
0
votes
0
replies
293
views
plots in gwasurvivr
gwasurvivr
r
survival
cox
2.3 years ago
laura.martinez.campelo
• 0
0
votes
6
replies
2.0k
views
Issues installing DESeq2, installation path not writable, package: survival
deseq2
survival
updated 9 weeks ago by
chanoul12
• 0 • written 2.6 years ago by
hall.brooke33
• 0
1
vote
0
replies
713
views
How to compute 95%CI after having C-index value?
survival
nomogram
cph
95CI
3.0 years ago
huynguyen96.dnu
▴ 20
0
votes
0
replies
379
views
Estimating survival function with left truncation?
Icens
Survival
Left-truncation
Interval-Censored
updated 3.5 years ago by
Martin Morgan
25k • written 3.5 years ago by
fabiana.gordon
• 0
3
votes
7
replies
2.7k
views
DESeq2 for survival analysis
deseq2
survival
rlog transformation
5.2 years ago
array chip
▴ 420
0
votes
0
replies
797
views
Need help determine optimal argument value on a rbsurv model
rbsurv
microarray
survival
5.3 years ago
JackieMe
• 0
2
votes
1
reply
1.1k
views
error/warning message while doing kmTCGA survival plot
RTCGA
survival
kmTCGA
updated 5.8 years ago by
jpgsabino
▴ 10 • written 5.8 years ago by
colonppg
▴ 30
0
votes
0
replies
626
views
Error with Reportingtools using ENSEMBL gene ID
reporting tools
modifyDF
survival
6.6 years ago
cagenet34
▴ 20
0
votes
1
reply
1.1k
views
simpleaffy segmentation fault
Survival
probe
genefilter
affy
affyio
Survival
probe
genefilter
affy
affyio
updated 7.7 years ago by
vlagani
• 0 • written 16.1 years ago by
Sucheta Tripathy
▴ 170
0
votes
1
reply
2.3k
views
CanceR: Survival plots
cancer
gui
survival
Kaplan-Meier
7.8 years ago • updated 7.7 years ago
kmezhoud
▴ 10
0
votes
1
reply
1.3k
views
[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression
Survival
snpStats
Regression
Survival
snpStats
9.1 years ago
David Winsemius
▴ 40
0
votes
2
replies
3.9k
views
Problem installing \'survival\' package/ Fix request + other options?
Survival
Survival
updated 9.5 years ago by
James W. MacDonald
62k • written 9.5 years ago by
Guest User
★ 12k
0
votes
1
reply
1.3k
views
Fwd: feature weights in 'superpc' package
Survival
ASSIGN
Survival
ASSIGN
updated 9.7 years ago by
Tim Triche
★ 4.2k • written 9.7 years ago by
Yukti Choudhury
▴ 10
0
votes
10
replies
1.7k
views
assignChromosomeRegion in 2.6.0 ChIPpeakAnno
Microarray
Annotation
GO
Network
Regression
Survival
Infrastructure
Escherichia coli
ROC
9.9 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
2.8k
views
ComBat
Transcription
Genetics
Pathways
Network
Survival
Cancer
Breast
Colon
Kidney
Leukemia
HIV
10.2 years ago
SSc Array Core
▴ 10
0
votes
1
reply
3.1k
views
undefined columns selected error when using bagging{ipred}
Survival
Survival
updated 10.4 years ago by
Valerie Obenchain
★ 6.7k • written 10.4 years ago by
Guest User
★ 12k
0
votes
2
replies
1.4k
views
Kaplan Meier curve
Survival
Survival
updated 10.6 years ago by
Heidi Dvinge
★ 2.0k • written 10.6 years ago by
wenhuo hu
▴ 200
0
votes
0
replies
1.9k
views
survival prediction from multiple genes
Survival
Ovarian
Survival
Ovarian
10.9 years ago
Ahmet ZEHIR
▴ 50
0
votes
0
replies
794
views
MLInterfaces, CMA, or Caret for censored survival?
Survival
Survival
11.0 years ago
Levi Waldron
▴ 10
0
votes
0
replies
714
views
globaltest 5.6.1 bug fix
Survival
globaltest
Survival
globaltest
11.5 years ago
Goeman, J.J. MSTAT
▴ 150
0
votes
1
reply
972
views
cox PH model - KM curve
Survival
phenoTest
Survival
phenoTest
updated 11.6 years ago by
Heidi Dvinge
★ 2.0k • written 11.6 years ago by
Adrian Johnson
▴ 330
0
votes
3
replies
1.5k
views
[Bioc-sig-seq] Bioconductor 2.8 is released
SNP
Sequencing
miRNA
Microarray
Annotation
Normalization
Pathways
Preprocessing
Survival
updated 11.8 years ago by
Ivan Gregoretti
▴ 310 • written 11.8 years ago by
Dan Tenenbaum
★ 8.2k
0
votes
0
replies
730
views
booklet on using R for biomedical statistics
Survival
Survival
12.1 years ago
Coghlan, Avril
▴ 190
0
votes
0
replies
753
views
globaltest 5.0.2
Survival
globaltest
Survival
globaltest
13.0 years ago
Goeman, J.J. MSTAT
▴ 150
0
votes
0
replies
744
views
2009 Courses***R/S-PLUS Advanced & Fundamentals - January 2009. Also check out our New&Emerging Courses.
Clustering
Survival
Clustering
Survival
14.1 years ago
sue@xlsolutions-corp.com
▴ 570
0
votes
1
reply
1.9k
views
forward conditional Cox and logistic regression
Genetics
Regression
Survival
Genetics
Regression
Survival
updated 14.1 years ago by
Laurent Gautier
★ 2.3k • written 14.1 years ago by
Katleen De Preter
▴ 130
0
votes
2
replies
952
views
applying coxfilter after LIMMA
Survival
Cancer
limma
Survival
Cancer
limma
updated 14.2 years ago by
James W. MacDonald
62k • written 14.2 years ago by
Adrian Johnson
▴ 330
0
votes
3
replies
1.6k
views
gene expression data followup
Survival
Cancer
Survival
Cancer
updated 14.2 years ago by
James W. MacDonald
62k • written 14.2 years ago by
Adrian Johnson
▴ 330
0
votes
3
replies
1.2k
views
Bioconductor 2.3 is released
aCGH
Sequencing
miRNA
Microarray
Visualization
Bayesian
Classification
Survival
Yeast
LPE
14.3 years ago
Patrick Aboyoun
1.6k
0
votes
0
replies
840
views
affycoretools vennSelect problem
Annotation
GO
Survival
probe
annotate
genefilter
affy
graph
limma
gcrma
annaffy
RBGL
14.6 years ago
Nick Henriquez
▴ 20
0
votes
2
replies
861
views
affycoretools vennSelect problem
GO
Survival
annotate
genefilter
affy
graph
gcrma
annaffy
RBGL
GOstats
biomaRt
affyio
updated 14.6 years ago by
James W. MacDonald
62k • written 14.6 years ago by
PeadarÓGaora
▴ 30
0
votes
2
replies
1.0k
views
'Factorial Design' package question
Survival
cdf
multtest
affy
factDesign
biomaRt
Survival
cdf
multtest
affy
factDesign
14.7 years ago
Glazko, Galina
▴ 350
0
votes
0
replies
1.7k
views
Significance Analysis of Microarrays (SAM)
Survival
Survival
14.7 years ago
Eleni Christodoulou
▴ 150
0
votes
0
replies
938
views
SECOND ANNOUNCEMENT: IV International Course on Microarray Data Analysis
Microarray
Annotation
Normalization
GO
Visualization
Classification
Clustering
Survival
GO
15.0 years ago
Ana Conesa
▴ 340
0
votes
0
replies
820
views
Inf values using SAM (package=siggenes)
Annotation
Survival
Cancer
genefilter
affy
limma
maDB
affyio
Annotation
Survival
Cancer
15.1 years ago
Holger Schwender
▴ 900
0
votes
0
replies
864
views
Inf values using SAM (package=siggenes)
Survival
Cancer
affy
limma
maDB
affyio
Survival
Cancer
affy
limma
maDB
affyio
15.1 years ago
Julian Lee
▴ 140
0
votes
0
replies
801
views
MTP error
GO
Survival
multtest
affy
affydata
annaffy
affyPLM
affyio
GO
Survival
multtest
affy
15.2 years ago
Boel Brynedal
▴ 200
0
votes
0
replies
1.1k
views
FIRST ANNOUNCEMENT: IV International Course on Microarray Data Analysis
Microarray
Annotation
Normalization
GO
Visualization
Classification
Clustering
Survival
GO
15.2 years ago
Ana Conesa
▴ 340
0
votes
1
reply
740
views
combining data from two R arrays
GO
Survival
annotate
genefilter
vsn
tilingArray
GO
Survival
annotate
genefilter
vsn
15.3 years ago
Richard Harrison
▴ 70
0
votes
4
replies
1.0k
views
running time of snapCGH processCGH and runDNAcopy
aCGH
Survival
CGH
annotate
genefilter
affy
DNAcopy
aCGH
GLAD
tilingArray
snapCGH
aCGH
updated 15.3 years ago by
jhs1jjm@leeds.ac.uk
▴ 230 • written 15.3 years ago by
caiwei@mdanderson.org
▴ 110
0
votes
2
replies
861
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH
Survival
Cancer
annotate
genefilter
affy
DNAcopy
aCGH
GLAD
tilingArray
snapCGH
updated 15.3 years ago by
J-C. Marioni
▴ 40 • written 15.3 years ago by
caiwei@mdanderson.org
▴ 110
0
votes
2
replies
862
views
vsm2
Survival
geneplotter
affy
vsn
limma
affyio
Survival
geneplotter
affy
vsn
limma
affyio
updated 15.3 years ago by
Wolfgang Huber
13k • written 15.3 years ago by
Richard Harrison
▴ 70
0
votes
0
replies
848
views
code for technical replicates in Limma with affy
Survival
cdf
annotate
affy
limma
gcrma
matchprobes
affyio
Survival
cdf
annotate
affy
15.4 years ago
Richard Friedman
★ 2.0k
0
votes
2
replies
908
views
problem with probes2tableBM
Annotation
GO
Survival
hgu133a2
annotate
genefilter
affy
graph
gcrma
matchprobes
GOstats
updated 15.4 years ago by
Steffen
▴ 500 • written 15.4 years ago by
Mayte Suarez-Farinas
▴ 510
0
votes
0
replies
737
views
problem with function to interrogate x:Map (exonmap)
Survival
genefilter
affy
plier
affyio
exonmap
Survival
genefilter
affy
plier
affyio
15.4 years ago
Wolfgang Raffelsberger
▴ 160
0
votes
7
replies
1.3k
views
problem with GOstats, developmental version?
GO
Survival
hgu95av2
annotate
affy
affydata
graph
Rgraphviz
limma
gcrma
matchprobes
GO
updated 15.4 years ago by
Seth Falcon
★ 7.4k • written 15.4 years ago by
Jenny Drnevich
★ 2.2k
0
votes
4
replies
992
views
problems rma() with mouse exon affy data in exonmap package
Survival
cdf
genefilter
affy
simpleaffy
plier
exonmap
Survival
cdf
genefilter
affy
updated 15.4 years ago by
James W. MacDonald
62k • written 15.4 years ago by
bruce
▴ 20
0
votes
1
reply
852
views
Exonmap mapping problems
Survival
genefilter
affy
plier
affyio
exonmap
Survival
genefilter
affy
plier
affyio
updated 15.4 years ago by
Michal Okoniewski
▴ 120 • written 15.4 years ago by
Tore Eriksson
▴ 10
0
votes
6
replies
2.7k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation
GO
Survival
ExperimentData
cdf
DynDoc
genefilter
geneplotter
multtest
affy
GO
updated 15.4 years ago by
Weiyin Zhou
▴ 220 • written 15.4 years ago by
Jenny Drnevich
★ 2.2k
0
votes
0
replies
1.4k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation
GO
Survival
ExperimentData
cdf
DynDoc
genefilter
geneplotter
multtest
affy
GO
15.4 years ago
Min Wook Kim
▴ 20
50 results • Page
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Comment: transcript name mapping between human and mouse
by
Eric
• 0
It works very well, and thanks for such a great answer! Because I use the old version gtf from GENECODE (vM12), the id version does not mat…
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
by
Bernardo
• 0
Just did that, thank you for the suggestion.
Comment: Empty ChipQC Report
by
Okan
• 0
Hi, I have the same issue. Have you found any solution or any reason why this is happening?
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
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Gordon Smyth
47k
Am I understanding correctly that you have 24 RNA-seq libraries in total, 6 from the pooled samples and 18 from regular samples with biolog…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
I'm sorry, I know it is kinda confusing... We have 6 pools in total: Phenotype A: T1a, T2, T1b, T1c Phenotype B: T1, T2 Each pool consist…
Votes
Answer: transcript name mapping between human and mouse
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
Volcano Plot in R
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Answer: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.
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