Bioconductor Reads

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750

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DiffBind Reads MACS2 FullLibSize

updated 4 months ago by Rory Stark ★ 5.2k • written 5 months ago by Marianna ▴ 20

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1.8k

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boxplot reads fastq sequencing rsubread

updated 5.6 years ago by Wei Shi ★ 3.6k • written 5.6 years ago by Raito92 ▴ 60

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1.2k

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rna-seq reads

updated 5.6 years ago by Gordon Smyth 52k • written 5.6 years ago by Ramiro Magno ▴ 100

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1.4k

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dexseq reads

7.5 years ago 514028929 • 0

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1.1k

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diffbind reads bamfiles

updated 7.7 years ago by Rory Stark ★ 5.2k • written 7.7 years ago by kbrnrc • 0

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2.0k

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genomicranges reads genomicfeatures Bam

9.8 years ago gen ▴ 30

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3.3k

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deseq filter reads

10.0 years ago ccheung • 0

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2.4k

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reads

updated 10.2 years ago by James W. MacDonald 67k • written 10.2 years ago by marcovth • 0

8 results • Page 1 of 1

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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k

R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…

Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0

Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…

Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0

EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…

Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Votes

A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

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