Bioconductor RnaSeq

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131

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DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq

updated 3 days ago by ATpoint ★ 4.1k • written 4 days ago by james.zhang20 • 0

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1.7k

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sgseq rnaseq

updated 17 hours ago by Sara • 0 • written 6.7 years ago by Sylvain Foisy ▴ 80

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153

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DESeq2 RNAseq

updated 11 days ago by Michael Love 41k • written 11 days ago by kcarey • 0

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163

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limma RNASeq voom

written 13 days ago by taur.vil • 0

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212

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technicalReplicates BatchEffect limma RNASeq

16 days ago • updated 13 days ago catv • 0

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177

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limma edgeR RNASeq

updated 16 days ago by Gordon Smyth 50k • written 17 days ago by Shaimaa Gamal • 0

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112

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DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 17 days ago by Michael Love 41k • written 17 days ago by 09191919 • 0

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139

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scRNAseq RNAseq

updated 25 days ago by ATpoint ★ 4.1k • written 27 days ago by Merav • 0

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860

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clusterProfiler RNASeq

updated 11 days ago by Guangchuang Yu ★ 1.2k • written 14 months ago by ruiqi.li ▴ 10

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919

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SingleCell RNASeq RNASeqData scRNAseq

updated 18 days ago by wichaidi • 0 • written 17 months ago by irvin.ng • 0

10 results • Page 1 of 1

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Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k

> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k

For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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Scholar to ATpoint ★ 4.1k