Bioconductor Rnaseq

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DESeq2 RNAseq

updated 2 days ago by Michael Love 41k • written 3 days ago by kcarey • 0

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103

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limma RNASeq voom

updated 4 days ago by Gordon Smyth 50k • written 4 days ago by taur.vil • 0

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164

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technicalReplicates BatchEffect limma RNASeq

8 days ago • updated 5 days ago catv • 0

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128

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limma edgeR RNASeq

updated 8 days ago by Gordon Smyth 50k • written 9 days ago by Shaimaa Gamal • 0

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DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 9 days ago by Michael Love 41k • written 9 days ago by 09191919 • 0

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124

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scRNAseq RNAseq

updated 17 days ago by ATpoint ★ 4.0k • written 19 days ago by Merav • 0

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821

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clusterProfiler RNASeq

updated 3 days ago by Guangchuang Yu ★ 1.2k • written 14 months ago by ruiqi.li ▴ 10

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891

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SingleCell RNASeq RNASeqData scRNAseq

updated 10 days ago by wichaidi • 0 • written 17 months ago by irvin.ng • 0

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692

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biomart rnaseq

written 5.2 years ago by jarod_v6@libero.it ▴ 40

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1.8k

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RNASeq edgeR RNASeq edgeR

updated 25 days ago by Gordon Smyth 50k • written 11.5 years ago by Maria Keays ▴ 30

10 results • Page 1 of 1

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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…

Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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