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limma technical replicates and biological replicates in same design
limma
SANTA
14.6 years ago • updated 4.9 years ago
Gordon Smyth
50k
0
votes
1
reply
1.2k
views
limma technical replicates and biological replicates in the same design
limma
SANTA
limma
SANTA
updated 4.9 years ago by
Gordon Smyth
50k • written 14.6 years ago by
Marcelo Laia
▴ 450
0
votes
0
replies
1.2k
views
FOSBE 2012
SANTA
SANTA
12.0 years ago
mabawsa
▴ 20
0
votes
5
replies
1.2k
views
Selected probes from a given probeset
Microarray
SANTA
Microarray
SANTA
12.0 years ago
Ramiro Rodríguez
▴ 30
0
votes
0
replies
1.3k
views
Bioinformatics course - October 2011 Registration is now open
Microarray
Cancer
biomaRt
ArrayExpress
genomes
SANTA
Microarray
Cancer
biomaRt
genomes
12.6 years ago
Claude Chelala
▴ 40
0
votes
0
replies
1.4k
views
[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq
ChIPSeq
Epigenetics
Cancer
chipseq
SANTA
RNASeq
ChIPSeq
Epigenetics
Cancer
SANTA
12.7 years ago
stefano iacus
▴ 430
0
votes
1
reply
1.2k
views
question on makeTranscriptDbFromUCSC
Cancer
rtracklayer
GenomicRanges
PING
SANTA
Cancer
rtracklayer
GenomicRanges
PING
SANTA
updated 13.9 years ago by
Ping Ma
▴ 10 • written 13.9 years ago by
Hervé Pagès
16k
0
votes
0
replies
870
views
limma technical replicates and biological replicates in the same design
limma
SANTA
limma
SANTA
14.6 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
865
views
Bioconductor Digest, Vol 79, Issue 20
Annotation
limma
SANTA
Annotation
limma
SANTA
14.6 years ago
Gordon Smyth
50k
0
votes
0
replies
810
views
OFF TOPIC high-density SSU rRNA microarray
Microarray
SANTA
Microarray
SANTA
14.6 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
929
views
[limma] Possible bug on read.maimages function ?
Annotation
limma
SANTA
Annotation
limma
SANTA
14.6 years ago
Marcelo Laia
▴ 450
0
votes
1
reply
1.2k
views
help needed on avereps function
Normalization
probe
limma
SANTA
Normalization
probe
limma
SANTA
updated 14.9 years ago by
Erika Melissari
▴ 250 • written 14.9 years ago by
Francois Pepin
★ 1.3k
0
votes
0
replies
1.4k
views
limma Time Course Experiments question
graph
limma
SANTA
graph
limma
SANTA
15.1 years ago
Marcelo Laia
▴ 450
0
votes
5
replies
1.8k
views
Expressionset from ArrayExpress processed data
ArrayExpress
SANTA
ArrayExpress
SANTA
updated 15.3 years ago by
Martin Morgan
25k • written 15.3 years ago by
Yovanny Izquierdo Núñez
▴ 20
0
votes
0
replies
1.0k
views
Job: Statistical Analyst - Affymetrix, Inc.
Microarray
Genetics
Classification
SANTA
Microarray
Genetics
Classification
SANTA
19.1 years ago
Higgs, Debi
▴ 10
0
votes
4
replies
1.3k
views
Affymetrix file parsers released under LGPL open source license
SANTA
SANTA
updated 19.4 years ago by
Harry Mangalam
▴ 60 • written 19.4 years ago by
Lelivelt, Mike
▴ 50
0
votes
1
reply
1.1k
views
PLIER is available as open source
plier
SANTA
plier
SANTA
updated 19.6 years ago by
Francois Collin
▴ 50 • written 19.6 years ago by
Lelivelt, Mike
▴ 50
0
votes
0
replies
971
views
Affymetrix Postdoctoral Opportunity
Microarray
SANTA
Microarray
SANTA
20.5 years ago
VanLieu, Connie
▴ 10
18 results • Page
1 of 1
Recent ...
Replies
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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