Bioconductor SRA

Showing : SRA • reset

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SRA DESeq2

4.7 years ago Serge • 0

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RNA-seq SRA reverse reads forward reads

7.6 years ago modarzi ▴ 10

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R fastq SRA sradb

updated 9.2 years ago by Martin Morgan 25k • written 9.2 years ago by grecoandreauni • 0

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sra chipseqDB fastq-dump .lite.sra

updated 9.3 years ago by James W. MacDonald 68k • written 9.3 years ago by xhe764 • 0

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1.9k

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ncbi sra search

10.0 years ago massacomgrao • 0

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4.6k

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rnaseq biocparallel workflows sra Tutorial

10.6 years ago Sean Davis 21k

6 results • Page 1 of 1

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Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0

Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…

Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k

The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …

Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0

Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …

Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0

Thank you!

Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0

Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …

Votes

A: DESeq2 - VST eliminates zero values

Comment: Normalise to a housekeeping gene in DESEq2

Comment: limpa analysis advice

C: AnnotationForge makeOrgPackage rsqlite_send_query error

Answer: Limpa Pipeline Order

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