Bioconductor SRA

Showing : SRA • reset

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1.3k

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SRA DESeq2

3.6 years ago Serge • 0

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1.1k

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RNA-seq SRA reverse reads forward reads

6.5 years ago modarzi ▴ 10

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1.5k

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R fastq SRA sradb

updated 8.1 years ago by Martin Morgan 25k • written 8.1 years ago by grecoandreauni • 0

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3.8k

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sra chipseqDB fastq-dump .lite.sra

updated 8.2 years ago by James W. MacDonald 67k • written 8.2 years ago by xhe764 • 0

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1.6k

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ncbi sra search

8.9 years ago massacomgrao • 0

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4.2k

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rnaseq biocparallel workflows sra Tutorial

9.5 years ago Sean Davis 21k

6 results • Page 1 of 1

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Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0

This is useful information.

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0

Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…

Votes

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

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Teacher to dsull ▴ 40