Bioconductor SRA

Showing : SRA • reset

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1.7k

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SRA DESeq2

4.6 years ago Serge • 0

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1.4k

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RNA-seq SRA reverse reads forward reads

7.6 years ago modarzi ▴ 10

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1.9k

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R fastq SRA sradb

updated 9.2 years ago by Martin Morgan 25k • written 9.2 years ago by grecoandreauni • 0

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4.8k

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sra chipseqDB fastq-dump .lite.sra

updated 9.3 years ago by James W. MacDonald 68k • written 9.3 years ago by xhe764 • 0

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1.9k

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ncbi sra search

10.0 years ago massacomgrao • 0

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4.6k

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rnaseq biocparallel workflows sra Tutorial

10.6 years ago Sean Davis 21k

6 results • Page 1 of 1

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Comment: Are individual-mouse-based statistics possible in CellChat? by LillianaVolkman99 • 0

thank you very much. https://www.biostars.org/p/9617271/

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

My apologies, I forgot that `design.group` is not included in the final matrix, because the baseline group effects are already captured by …

Answer: Bile acid analysis with limpa by Gordon Smyth 53k

I am not familiar with targeted HPLC-MS and I don't know what you mean by "peak areas". If it produces standard format mass spec data from …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Confirming my understanding after executing the code provided: this is similar to a design formula of `~0+mouse+group+group:allele`, except…

Comment: Combining two proteomics datasets with limpa by Andrew Pattison • 0

Thanks heaps Gordon. I went with option 1 and no normalisation and all seems to have worked well. Cheers, Andrew

Votes

A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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