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SRA
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Creating a DESeqDataSet from a RangedSummarizedExperiment - where is the design parameter in RangedSummarizedExperiment
SRA
DESeq2
2.8 years ago
Serge
• 0
0
votes
0
replies
889
views
Problem for Splitting reverse and forward reading in my RNA-seq
RNA-seq
SRA
reverse reads
forward reads
5.7 years ago
modarzi
▴ 10
2
votes
1
reply
1.2k
views
Uniting SRA Data into a single file
R
fastq
SRA
sradb
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
grecoandreauni
• 0
0
votes
3
replies
3.2k
views
download SRR*.lite.sra files using fastq-dump command
sra
chipseqDB
fastq-dump
.lite.sra
updated 7.5 years ago by
James W. MacDonald
65k • written 7.5 years ago by
xhe764
• 0
0
votes
0
replies
1.4k
views
Search SRA based on BioSample Attributes
ncbi
sra
search
8.2 years ago
massacomgrao
• 0
6
votes
1
reply
3.8k
views
Tutorial:
Orchestrating a small, parallel, RNA-seq pre-processing workflow using R
rnaseq
biocparallel
workflows
sra
Tutorial
8.7 years ago
Sean Davis
21k
6 results • Page
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Comment: Minfi - estimatecellscount
by
clacarion
• 0
Thank you for your response, that's what i was thinking I will try with the rgset only and come back to tell you what's happening ! Best…
Answer: Minfi - estimatecellscount
by
James W. MacDonald
65k
Don't filter first. You are likely removing the CpGs that are used to estimate the cell counts.
Comment: limma models out of memory issue on Slurm HPC
by
SamGG
▴ 330
> Alternatively you could run each linear model fit (var1 to var6) in a separate batch run, and again that would presumably work. I think …
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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