Bioconductor SRA

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770

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SRA DESeq2

2.3 years ago Serge • 0

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740

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RNA-seq SRA reverse reads forward reads

5.2 years ago modarzi ▴ 10

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1.1k

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R fastq SRA sradb

updated 6.9 years ago by Martin Morgan 25k • written 6.9 years ago by grecoandreauni • 0

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2.7k

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sra chipseqDB fastq-dump .lite.sra

updated 7.0 years ago by James W. MacDonald 63k • written 7.0 years ago by xhe764 • 0

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1.2k

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ncbi sra search

7.7 years ago massacomgrao • 0

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3.5k

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rnaseq biocparallel workflows sra Tutorial

8.2 years ago Sean Davis 21k

6 results • Page 1 of 1

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Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

Hi Koki, sorry for not seeing this before. > will SparseArraySeed in DelayedArray be replaced by this new sparse array format? Yes it wil…

Comment: Manual creation of qPCRset does not work by Ed Siefker ▴ 230

Thanks! This works for me.

Answer: Manual creation of qPCRset does not work by James W. MacDonald 63k

``` > mat <- matrix(rnorm(6*96), ncol = 6, nrow = 96, byrow = FALSE) > pd <- new("AnnotatedDataFrame", data = data.frame(1:6, row.names …

Answer: ukb Chromosomal position information was converted into SNPS by James W. MacDonald 63k

In my work, we almost always convert RSIDs to chr:pos because the former is ambiguous and changing whereas the latter is not. Which is like…

Comment: T.fit function of maSigPro returns error message by hanna.g • 0

Addition to the issue above: the T.fit function works only when choosing the step.method = "forward", for whatever reason. Maybe this clue …

Votes

Answer: Manual creation of qPCRset does not work

Answer: MDS plot edgeR

A: legend with gradient in ComplexHeatmap

Comment: comparing contrasts in edger/lima using makeContrasts function

Answer: comparing contrasts in edger/lima using makeContrasts function

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