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SRA
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Creating a DESeqDataSet from a RangedSummarizedExperiment - where is the design parameter in RangedSummarizedExperiment
SRA
DESeq2
2.3 years ago
Serge
• 0
0
votes
0
replies
740
views
Problem for Splitting reverse and forward reading in my RNA-seq
RNA-seq
SRA
reverse reads
forward reads
5.2 years ago
modarzi
▴ 10
2
votes
1
reply
1.1k
views
Uniting SRA Data into a single file
R
fastq
SRA
sradb
updated 6.9 years ago by
Martin Morgan
25k • written 6.9 years ago by
grecoandreauni
• 0
0
votes
3
replies
2.7k
views
download SRR*.lite.sra files using fastq-dump command
sra
chipseqDB
fastq-dump
.lite.sra
updated 7.0 years ago by
James W. MacDonald
63k • written 7.0 years ago by
xhe764
• 0
0
votes
0
replies
1.2k
views
Search SRA based on BioSample Attributes
ncbi
sra
search
7.7 years ago
massacomgrao
• 0
6
votes
1
reply
3.5k
views
Tutorial:
Orchestrating a small, parallel, RNA-seq pre-processing workflow using R
rnaseq
biocparallel
workflows
sra
Tutorial
8.2 years ago
Sean Davis
21k
6 results • Page
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Comment: Speeding up of DelayedArray::write_block()
by
Hervé Pagès
16k
Hi Koki, sorry for not seeing this before. > will SparseArraySeed in DelayedArray be replaced by this new sparse array format? Yes it wil…
Comment: Manual creation of qPCRset does not work
by
Ed Siefker
▴ 230
Thanks! This works for me.
Answer: Manual creation of qPCRset does not work
by
James W. MacDonald
63k
``` > mat <- matrix(rnorm(6*96), ncol = 6, nrow = 96, byrow = FALSE) > pd <- new("AnnotatedDataFrame", data = data.frame(1:6, row.names …
Answer: ukb Chromosomal position information was converted into SNPS
by
James W. MacDonald
63k
In my work, we almost always convert RSIDs to chr:pos because the former is ambiguous and changing whereas the latter is not. Which is like…
Comment: T.fit function of maSigPro returns error message
by
hanna.g
• 0
Addition to the issue above: the T.fit function works only when choosing the step.method = "forward", for whatever reason. Maybe this clue …
Votes
Answer: Manual creation of qPCRset does not work
Answer: MDS plot edgeR
A: legend with gradient in ComplexHeatmap
Comment: comparing contrasts in edger/lima using makeContrasts function
Answer: comparing contrasts in edger/lima using makeContrasts function
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