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SVD
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error in champ.SVD
svd
methylation
champ
updated 18 months ago by
shepherl
4.1k • written 18 months ago by
Giulia
• 0
0
votes
0
replies
494
views
Distance between columns vs distance between rows and SVD
distance
svd
21 months ago
Lenny186
• 0
0
votes
2
replies
2.0k
views
Some terms in EPIC Methylation Analysis
ChAMP
SVD
Array
Slide
Sample Plate
updated 6.1 years ago by
Yuan Tian
▴ 290 • written 6.1 years ago by
yuabrahamliu
• 0
4
votes
5
replies
3.1k
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SVA and proportion of variance explained
sva
svd
explained variance
pca
updated 8.0 years ago by
Jeff Leek
▴ 650 • written 8.0 years ago by
Mattia
▴ 10
0
votes
1
reply
2.2k
views
News:
Bug in ChAMP package champ.SVD() function
champ
methylation
450k
SVD
EPIC
News
8.2 years ago
Yuan Tian
▴ 90
5 results • Page
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Answer: single cell RNA seq pseudobulk batch correction
by
James W. MacDonald
67k
You can exclude the females from the non-responders.
Answer: Normalized counts to be used in decoupleR from deseq2 results
by
James W. MacDonald
67k
No, you never use normalized counts for anything but plotting. Can you point out the example that uses normalized counts?
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
by
James W. MacDonald
67k
If you care to know more about the process, there is a [GitHub with all the code][1]. It's pretty complicated though - the readme alone is …
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
by
Guido Hooiveld
★ 4.1k
Thanks; I did not know which file exactly is being used. Good catch regarding the discrepancy between the 2 web pages. I will get in touch …
Answer: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
by
James W. MacDonald
67k
The data for the `OrgDb` packages comes directly from NCBI, and in this case the symbols come from the gene_info.gz file you [can get from …
Votes
Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu
Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
Comment: limma technical repeat correction
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