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runUMAP scater Matrix

updated 11 weeks ago by Hervé Pagès 16k • written 6 months ago by inzirio ▴ 10

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scuttle scater

updated 8 months ago by ATpoint ★ 4.2k • written 8 months ago by Abbi Edwards • 0

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plotHeatmap scater

11 months ago Alina • 0

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scater runPCA

updated 8 weeks ago by alan.ocallaghan ▴ 160 • written 8 weeks ago by Najla Abassi • 0

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scater

updated 3 months ago by alan.ocallaghan ▴ 160 • written 3 months ago by Dario Strbenac ★ 1.5k

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scater

updated 3 months ago by alan.ocallaghan ▴ 160 • written 3 months ago by Dario Strbenac ★ 1.5k

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scran bluster scater scuttle

updated 8 weeks ago by ATpoint ★ 4.2k • written 8 weeks ago by Dario Strbenac ★ 1.5k

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Comment: Using the plotting functions of clusterProfiler / enrichplot with enrichment res by jovel_juan ▴ 30

enrichPlot requirements are rather low. All what it needs is to provide few columns named specifically. I student of mine wrote the first v…

Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by ATpoint ★ 4.2k

SAF files must not have a header.

Comment: Running ENmix with mouse methylation manifest: readidat error - Error in readman by xuz • 0

Could you try the latest version (1.40.1) to see how it works, I am not able to replicate the error message on my computer here.

Comment: Not able to install any Bioconductor 3.18 package [unable to access index] by merv ▴ 120

Thanks! I can confirm it is working now - had been broken since sometime yesterday.

Comment: Errors in chromosome annotation-biomaRt by landenshanie ▴ 40

Thank you, I ran your exact code and it correct for Xist, however Ddx3y is still wrongly annotated to chr13 and, like your results, Dusp1 i…

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Answer: Not able to install any Bioconductor 3.18 package [unable to access index]

Seurat/DESeq2 - single cell RNA-seq differential expression

Seurat to SingleCellExperiment Converting error in MAC

Error when converting Seurat to SingleCellExperiment

Comment: unable to access bioconductor packages - qvalue installation failed...

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