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Seqnames
•
reset
0
votes
5
replies
2.6k
views
Grange object subsetting using seqnames
Seqnames
makeGRangesFromDataFrame
GRanges
Subsetting
GenomicRanges
2.9 years ago
rtrivedi1
▴ 10
2
votes
1
reply
800
views
DNAStringSet to DNAStringSetList according to pattern in sequence names
dnastringset
dnastringsetlist
seqnames
5.5 years ago
s.ghignone
▴ 10
0
votes
1
reply
986
views
GenomeInfoDb: where are the genome patches?
seqnames
genomeinfodb
updated 7.0 years ago by
Hervé Pagès
16k • written 7.0 years ago by
matt.chambers42
▴ 10
0
votes
2
replies
1.8k
views
GenomicRanges: `seqnames<-` can not work as expected
genomicranges
seqnames
factor
7.5 years ago
wcstcyx
▴ 30
0
votes
1
reply
886
views
error in noGGi
software error
seqnames
characters
r
chipseq
8.0 years ago
awakumaya
• 0
17
votes
4
replies
16k
views
How to properly sort GRanges?
granges
genomicranges
sort
seqnames
order
updated 9.1 years ago by
yinghua
▴ 30 • written 9.5 years ago by
enricoferrero
▴ 660
0
votes
6
replies
6.3k
views
GRanges: problem with multiple seqnames and seqlengths
GRanges
seqnames
seqlengths
IRanges
9.6 years ago
topher.hamm
• 0
7 results • Page
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Comment: deseq2 results
by
swbarnes2
★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Comment: error
by
NATASHA
• 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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