Bioconductor SequencingData

Showing : SequencingData • reset

votes

replies

382

views

sequencing Sequencing SequencingData

11 months ago communication • 0

vote

1.1k

views

edgeR SequencingData miRNA TMM Normalization

updated 2.1 years ago by Gordon Smyth 52k • written 2.1 years ago by tleona3 • 0

votes

replies

815

views

Transcriptomics SequencingData

2.3 years ago Rom • 0

votes

replies

1.0k

views

SequencingData

3.4 years ago • updated 3.3 years ago adR ▴ 40

votes

replies

1.5k

views

SequencingData ATACSeq ATACseqQC

updated 2.6 years ago by Rory Stark ★ 5.2k • written 3.4 years ago by adR ▴ 40

votes

replies

867

views

SequencingData STR MutationalPatterns pedigree HapMap

3.6 years ago Negar • 0

6 results • Page 1 of 1

Recent ...

Replies

Answer: Use of org.Rn.eg.db with GRCr8 reference genome by James W. MacDonald 68k

You've got it backwards. It should be ``` adult_res_df$symbol <- mapIds(org.Rn.eg.db, keys = rownames(adult_res_df), column = "ENSEMBL"…

Comment: DESeq2 swap ensembl gene id rownames with gene symbol column by Erika • 0

Alternatively, you could have added a column with the common gene names. Assuming your dataframe `df` was created using `DESeq()`, somethin…

Answer: Clarification on GOALL / GO2ALLORFs mapping by James W. MacDonald 68k

It appears that 'negative regulation of glycogen biosynthesis' has an 'is a' relationship with 'glycogen biosynthetic process' https://www.…

Comment: Can't post a question? by DavideSant • 0

Thank you, this was super useful!

Comment: Error in retrieving clinical data by silickas • 0

Thank you for the reply. I will try to do that next time. This time instead, I used the GenomicDataCommons package to download clinical dat…

Votes

Comment: Can't post a question?

Answer: Limma - Complex 2-way multi-level contrast with paired samples

Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks

Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression

Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf

Awards • All